Methylophaga thalassica: VSX76_13065
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Entry
VSX76_13065 CDS
T09743
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VSX76_13065 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtha03400
]
VSX76_13065 (mutM)
Enzymes [BR:
mtha01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VSX76_13065 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VSX76_13065 (mutM)
DNA repair and recombination proteins [BR:
mtha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VSX76_13065 (mutM)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
WVI84699
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Position
1:2391455..2392273
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AA seq
272 aa
AA seq
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MPELPEVETTRRGIQPFIKNQSITKMVVRHRGLRWPIPEGLESIVKDQIVHRIERRAKYL
LLHCDTGTLIIHLGMSGRLRVLDNDDNINKHDHVDIFFQNGYVLRFTDPRRFGAVLWTED
SYEHHPLIAHLGPEPLSDAFELNYLHQRAKGRTSPIKTFIMNGEVVVGVGNIYANEALFM
AGIHPSTAAGKISKKQLAELVDAIKKVLEKALLAGGTTLRDFRKSDGNPGYFAQELHVYG
REGQACLRCQTPISSIRQAQRATYFCSQCQPD
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcctgaagtagaaaccactcggcgtggtattcagccctttattaaaaac
cagtccattaccaaaatggtggtgcgtcaccgcggattacgctggccgattcctgaaggg
ctggaatcgatcgtaaaagatcaaattgtgcacagaattgagcgccgagcaaaatattta
ctcttacactgtgacaccggcaccttgataatccatctaggtatgtccggacgtttacgt
gtgctcgataatgatgacaacatcaataaacatgatcatgtcgatattttttttcaaaac
ggttatgtgttgaggtttaccgatccacgccgctttggtgccgtattatggacagaggat
tcgtatgaacatcatccactcattgcccatttagggccagagcctttgtcagatgccttt
gagcttaattatcttcatcaacgtgccaaaggtcggaccagccctataaaaacatttatt
atgaatggtgaagtagtggttggcgtcggcaatatctatgctaatgaagccctttttatg
gctggcattcatccaagtactgctgccggtaaaatcagcaaaaaacaacttgctgaatta
gtcgatgccatcaaaaaagtattggaaaaagccttgctcgcaggcggaactaccttacgt
gatttcagaaaaagtgatggcaatccgggatattttgcacaagaactccatgtctatgga
cgagaaggacaggcctgtttacgctgccaaaccccgataagcagtatcagacaagcacaa
agagccacttatttttgtagccaatgtcagcctgactga
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