Methylophaga thalassica: VSX76_13810
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Entry
VSX76_13810 CDS
T09743
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSX76_13810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtha03019
]
VSX76_13810
03009 Ribosome biogenesis [BR:
mtha03009
]
VSX76_13810
Enzymes [BR:
mtha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VSX76_13810
Messenger RNA biogenesis [BR:
mtha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VSX76_13810
Ribosome biogenesis [BR:
mtha03009
]
Prokaryotic type
rRNA processing factors
VSX76_13810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WVI84841
LinkDB
All DBs
Position
1:complement(2542390..2544870)
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AA seq
826 aa
AA seq
DB search
MKRILINATHEEELRVAMVDGQRLFDLDIDTPSREQKKGNIYKGKITRVEPSLEAVFVDY
GAERQGFLPLKEISKTYFKKRDDNDDNNGRLNVQDVLSVGQELVVQIEKEERGNKGAALT
TFISLAGRYLVLMPNSPRAGGISRRIEGDDRAELQEALRSLEVPDGMGMIVRTAGVGKQP
EELQWDLEYLIQLWTAIDVAVKDRSAPFLVYQESNIIIRALRDYLRKDIGEILVDSPEVY
QTGYDFMRMVMPHELSKFKLYQDKVPLFTRYQVESQIESAFRHEVRLPSGGALVIDPTEA
LISIDVNSARANKGGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMGPSRNQRE
VENRLREHLKADRARVQVGRISRFGLLEMSRQRLRPALGDAHQEICPRCAGLGHVRGVES
LGLAVLRLIEEEATKDKVTQLIVQLPVPVATFILNDKRTQVDIIEKRHGVKLVLIPNPHL
DTPHYDIERIKDGSERNEVSHQLISPPEQEVPVVLRDKPVMEQPAVKGISPAAPAPVIVR
EKEPEQKPSLLKRLLNVLTGKSEPEKEEKSVVDTKKEKSSQEQRSQNRRGRSRPKNNAAN
NQESAEKNGERKNPRRRNDKNVDNTEQKKADMPTPPVKEESASDNNDDKQPRNSNGRRSR
RGGRRRRPARAENGSTDNNAVNPAEVDKGNIAPPPPPEVNGNAIPEPEPEVNGNVIKSDK
EPEIDGNKVPANKPRRPRSSGPTNRRRRPSDKDKAEAAAANAAKEGDSAKPVEKAEASDK
PVEKQAEKHAEDKKAVVEKSSTSDDNGSEKKTKAKSEASETNATQE
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaattttaattaacgcaacgcacgaagaagagttgcgtgtggcaatggtcgat
ggccaacgcctgtttgatctggatatcgatacaccttccagagaacaaaagaaaggtaat
atttataagggaaaaatcactcgtgtagaaccgagtttagaagctgtctttgttgactat
ggtgcagaaagacaaggcttcttaccactgaaagaaatttcaaaaacctacttcaaaaag
cgtgatgacaatgacgacaataatggtcgtctgaatgttcaggacgtgctttctgttggc
caggaactggttgtccaaattgaaaaagaagagcgtggtaataaaggtgctgcgctgact
acattcatcagcctggctggtcgctatttagtcttaatgccaaacagtcctcgtgctggt
ggtatttctcgtcgcatcgaaggtgatgatcgtgcagagctgcaagaagccctgcgctca
cttgaagtaccagatggaatgggcatgattgtgcgtaccgcgggtgtgggtaagcaacct
gaagaattacagtgggatcttgaataccttatccagttgtggacggcgattgatgtggct
gtaaaagatcgtagcgcgccattccttgtttaccaggaaagcaacattatcatccgcgca
ctacgtgattatctgcgtaaagatatcggtgagattctggttgattcgcctgaagtttac
caaacaggctatgacttcatgcgtatggtaatgccgcatgagctgagtaaatttaagcta
tatcaagacaaagttccgctatttacccgctatcaggttgaaagccagattgagagtgct
ttccgtcatgaagttcgtctgccgtctggtggtgcactagtgattgatccgaccgaagcg
ttgatttctatcgatgtgaactcagcacgcgctaacaaaggcggtgatattgaggaaaca
gctctaaacaccaatcttgaagcggcagaagaaattgcccgtcagttaaggttgcgtgat
ctaggcggtttggtggtaattgatttcattgacatggggccaagccgtaatcagcgtgaa
gtcgaaaaccgtttacgtgaacatttgaaagcagatcgtgcccgtgttcaggttggccgc
atctctcgctttggtttattagaaatgtcccgtcagcgtttacgtccagctttaggtgat
gcgcatcaggaaatctgtcctcgctgtgcgggtctgggtcatgttcgcggtgttgaatca
ctgggcttagcggtattacgactcattgaagaagaagccaccaaagacaaagtcacgcaa
ttaatcgttcagttacctgttcctgtggcgacattcattcttaatgataagcgcacacag
gtcgatatcattgagaagcgacacggtgtgaagttggttctaattccaaacccacatctg
gatacgcctcattatgatatcgagcgcattaaggatggtagcgagcgcaatgaagtcagt
catcaattaatttctccgccagaacaggaagtaccagttgttttacgtgacaaacctgtc
atggaacaacctgcggtgaaaggcatttcgcctgcagcacctgctcctgtgattgttcgt
gagaaagagcctgaacaaaaaccaagcctgcttaaacgtctgttgaatgtgttgacagga
aaaagtgagccagaaaaggaagaaaagtccgtagtggatactaaaaaagaaaaaagctca
caagaacaacgttcgcagaatcgtcgtggacgtagccgtccaaaaaataatgcagcgaat
aatcaagagtctgctgaaaaaaatggtgaacgtaagaatccgcgacgcaggaatgataaa
aacgtcgataatactgaacagaaaaaggctgacatgcctactccaccagtgaaagaggag
tcggcatcagacaataacgatgataaacagcctcgtaatagtaatggtcgtcgttcacgt
cgcggtggtcgccgtcgtcgtccagcgcgcgctgaaaacggttcaactgacaacaatgca
gtcaatcctgctgaggtggataaaggcaatatagcgccaccaccgccaccagaggtgaat
ggaaatgctattcctgagccagagcctgaagtgaatggcaacgtcatcaaatcggataaa
gagccggaaatagatggcaataaagtaccagccaacaagcctcgccgacctcgctcatca
ggaccgacaaacagacgtcgtcgtccaagtgataaggacaaagcagaagcggcagcggct
aatgcggcaaaagagggtgattcagctaaacccgtagaaaaagcagaagcaagtgataag
ccggttgaaaaacaagcagaaaaacacgctgaagacaaaaaagcagtggtagaaaaaagt
tcgacttcggatgataatggctctgaaaagaaaacgaaggccaaatctgaagcgagtgag
acgaatgccacgcaagagtaa
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