Methylophaga thalassica: VSX76_14460
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Entry
VSX76_14460 CDS
T09743
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VSX76_14460 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtha03400
]
VSX76_14460 (sbcB)
Enzymes [BR:
mtha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
VSX76_14460 (sbcB)
DNA repair and recombination proteins [BR:
mtha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
VSX76_14460 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VSX76_14460 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VSX76_14460 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WVI84968
LinkDB
All DBs
Position
1:2681211..2682659
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AA seq
482 aa
AA seq
DB search
MNTLYWHDYETSGTDPRYDRPLQFAGIRTDEDLNIIGEPLMIYCKPANDFLPHPQASLIT
GITPQKAQQEGLTEAEFMARIHAELAEPGTCGVGYNSLRFDDEFTRFSLFRNFYDAYARE
WQNGNSRWDIIDMVRLTRALRPEGINWPDHDDGKPSFRLEHLTAANNIEQIGAHDALVDV
YATIEIAKLIKNVQPKLFDYVYQNRRKNNIAPLLNIHDRTPVIHVSRMYPSECCGTALVV
PLAKDPTNPNGVIVYDCRYDPTDLIELDAETLQQRLFTPSADLAEGIQRPALKTIHINKC
PVVVPAATLNEDAAKRLDIDRAQHQRHLDMLNAAGDLSEKLSQIFTPKPFDPVADPDASL
YSGGFFSDNDKRKMELIRSAEPDMLKTLSIPFEDSRLAEMLFRYRARNWPDSLTEDEQDQ
WLQYRQQRLADETPDAILNFSRFYSALAEAKQQDLPEQKQKVLAELTHYASQLAAELGYQ
AK
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgctttactggcatgactatgaaacttctggcacggatccccgttatgacaga
cctttgcagtttgccggtattcgtacagacgaagatcttaatatcatcggcgagccgttg
atgatttattgcaaacccgccaatgactttttgccccatcctcaagcctctttaatcacg
ggtattactccacaaaaagctcagcaggaaggtttaacagaagccgagttcatggcacgt
attcatgccgaactcgcagaacccggcacgtgtggtgttggttataacagcttgcgcttt
gatgatgagttcacacgctttagtttgttccgtaatttttatgatgcctatgcccgtgaa
tggcaaaacggtaattcccgttgggacattatcgatatggtcagactcacccgagcttta
agaccagaaggcatcaactggccggatcatgatgatggcaaacccagtttccgcctggaa
catttaacagctgcaaacaatatcgaacaaatcggtgctcatgatgccctagtcgacgtt
tatgcgacgatagaaattgccaagctcatcaaaaatgtccaacccaaattgtttgattac
gtttatcagaatcgtcgtaaaaacaatattgccccgctgctcaatatccatgacagaacc
ccggtcattcatgtatcgagaatgtatccgagtgaatgttgtggcactgcactggttgtg
cccttagcaaaagatccgactaatcctaatggtgttattgtctacgactgccgttatgat
cccaccgatctgattgagcttgatgcagagacattacagcaacgtttatttaccccctca
gccgatctggctgaaggtattcaacgtccggcccttaaaaccattcatatcaataaatgc
ccagtggttgtgccagcagcgacattaaatgaggatgctgcaaaacgcttagatattgat
cgtgcccaacatcaacgtcacctggacatgttaaatgcggcaggtgatttaagcgaaaag
ctgtcacagatttttacacctaaaccatttgatccggtggctgatcctgatgccagtctc
tacagcggtggttttttcagtgacaatgataaacgcaagatggagcttattcgttcagct
gagccggatatgttaaaaacattatctatcccttttgaagactcgcgtctggccgagatg
ttattccgttatcgggctcgtaactggcctgattccttgactgaagatgaacaagatcaa
tggctgcaatatcgtcagcaacgactggcagatgagacaccagacgctattcttaacttc
tcacggttttattcagcgcttgctgaagcaaagcaacaagatttacctgaacaaaaacaa
aaagttctggctgaactcacccactacgccagccaattagctgctgaacttggttaccaa
gcgaaataa
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