Methylorubrum thiocyanatum: JCM10893A_20660
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Entry
JCM10893A_20660 CDS
T12001
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mthc Methylorubrum thiocyanatum
Pathway
mthc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM10893A_20660 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mthc03021
]
JCM10893A_20660 (rho)
03019 Messenger RNA biogenesis [BR:
mthc03019
]
JCM10893A_20660 (rho)
Transcription machinery [BR:
mthc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JCM10893A_20660 (rho)
Messenger RNA biogenesis [BR:
mthc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JCM10893A_20660 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
AAA_25
AAA
S1CSD-TOTE-2
TssC_VipB_C
AAA_14
Motif
Other DBs
NCBI-ProteinID:
BGY98564
LinkDB
All DBs
Position
2181180..2182523
Genome browser
AA seq
447 aa
AA seq
DB search
MTSQNDALAPVEAPAEAAVAPADLAARREVKLQDLKSKSPTELIAFAEEVEVENASTMRK
QELMFAILKQLAANETEIIGAGTVEVLQDGFGFLRSNDSNYLPGPDDIYISPTQIRRFGL
RTGDTVEGPIRGPKDGERYFALIKVNTINFENPEKIKHKVHFDNLTPLFPTKRFKLELDN
PTKKDFSPRIIDIVSPIGKGQRALIVAPPRTGKTVLMQNIAQSITLNHPECYLIVLLIDE
RPEEVTDMIRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLG
RAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVI
FEEFKGTGNSEIILDRKVSDKRIFPAIDITRSGTRKEELLVPPDSLKKTYVLRRILNPMG
VTDAIEFLMDKLRQTKSNSDFFDSMNT
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacagaacgacgctctcgcccccgtcgaagctccggccgaagccgccgtcgcg
ccggccgacctcgccgcccggcgagaggtgaagctccaggacctcaagtccaaatcgccg
accgaactcatcgccttcgccgaggaggtcgaggtcgagaacgcctcgaccatgcgcaag
caggagttgatgttcgcgatcctcaagcagctcgcggccaacgagaccgagatcatcggt
gccggcacggtcgaggtgcttcaggacgggttcggcttcctgcgctcgaacgactcgaac
tacctcccgggtccggacgacatctacatttcgccgacccagatccgccgcttcggcctg
cgcaccggcgatacggtggagggcccgatccgcggccccaaggacggcgagcgctacttc
gcgctgatcaaggtcaacacgatcaacttcgagaacccggagaagatcaagcacaaggtc
cacttcgacaacctgacgccgctgttcccgacgaagcggttcaagctcgaactggacaac
ccgaccaagaaagatttcagcccccgcatcatcgacatcgtctcgccgatcggcaagggc
cagcgcgcgctgatcgtcgcgccgccgcgtaccggcaagaccgtgctgatgcagaacatc
gcgcagtcgatcaccctcaaccaccccgaatgctacctcatcgtgctgctcatcgacgag
cgcccggaggaggtgaccgacatgatccgctcggtgaagggcgaggtcatcgcctcgacc
ttcgacgagccggccacccgccacgtgcaggtcgccgagatggtgatcgagaaggccaag
cggctcgtggagcacggccgcgacgtggtgatcctgctcgactcgatcacccggctgggc
cgcgcctacaacaccgtggtgccgtcctccggcaaggtgctgaccggcggtgtcgacgcc
aacgccctgcagcggcccaagcgcttcttcggcgcggcccgcaacatcgaggaaggcggc
tcgctcaccatcatcgccaccgcgctgatcgataccggatcgcgcatggacgaggtgatc
ttcgaggagttcaagggcaccggcaactccgagatcattctcgaccgcaaggtctccgac
aagcgcatcttcccggccatcgacatcacccgctccggtacccgcaaggaggagctgctg
gtgccgccggattcgctcaagaagacctatgtcctccgccgcatcctcaacccgatgggc
gtcaccgacgcgatcgagttcctcatggacaagctgcgccagaccaagagcaacagcgac
ttcttcgactcgatgaacacctga
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