Microbulbifer thermotolerans: A3224_01385
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Entry
A3224_01385 CDS
T04393
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mthd
Microbulbifer thermotolerans
Pathway
mthd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3224_01385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthd03019
]
A3224_01385
03016 Transfer RNA biogenesis [BR:
mthd03016
]
A3224_01385
Enzymes [BR:
mthd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A3224_01385
Messenger RNA biogenesis [BR:
mthd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3224_01385
Transfer RNA biogenesis [BR:
mthd03016
]
Prokaryotic type
tRNA degradation factors
A3224_01385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AMX01409
UniProt:
A0A143HI62
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All DBs
Position
347415..350114
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AA seq
899 aa
AA seq
DB search
MTQKKTSDHHLASAPADPYAEREAEKYEKPVPSREFLLQLLERQPEPVSWEKVADLLDIR
DADRREGVRRRLIAMSRDGQIASNRSGDFGVLDKMSLIRGRVIGHRDGFGFVAPRDGGDD
LYLSHRQMRKVFDGDEVLVRETPGGFRGKREAAVVRVIKHNTQQLAGRLYRENGICFVRP
DNPRINLDVMVAEEHTAGAGHGQYVVVKIVTQPGRDKVPQGEVIEVLGDHLAPGMEIDVA
IRNYDIPHVWPAAVLSEVEAIPDEVVEGDKSGRVDLRQLPLVTIDGEDARDFDDAVYCEA
LPDGGWKLLVAIADVSHYVRPGTPLDEEAHNRGNSVYFPDFVVPMLPEKLSNGLCSLNPE
VDRLCMVCEMHIDRDGEIRDYRFFEGVMRSHARLTYTQVGQIIAERGLRGSGLRKQFAAL
TPHLDNLHDLYKALRSARDRRGAIDFETTETRIIFDANRKIERIVPVVRNDAHKLIEECM
LAANVCAARLMELAEVPALYRVHDAPKEEKLSNLREYLGELGLRLPGGAEPQPMDFQLLL
EQVAGRADAHIIQMMLLRSMNQAVYQPENRGHFGLDYPAYAHFTSPIRRYPDLLLHRALR
WLIRNGDANERAVAKKVYSVPGAKVIPREKILPYDMPAMVLLGEHCSMTERRADDATRDV
VSWLKCEYLQDRVGEVYTGVISAVTGFGLFVELADLYVEGLVHVTALPKDYYRFEQAHQR
LVGERSGRRYHLGDSVRVQVARVDLDERKVDFTLEELMPREQVKVSARAMEMALEHQRER
DRRGKSSAAKKSGPGGRGTASPWAGRAELPPAAAPIRKRKVGTTEAVPVETRLTENAAGS
EEEIPAKKRRRPKRTPPRKGGKRPAVAARKAAQRAAKANGKTIKAKKKKKSSIKRKKKK
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
ttgacgcaaaagaaaacttcagatcaccacctcgccagtgctcccgccgatccctacgcg
gagcgtgaggcggaaaaatacgaaaaacctgttcccagccgagaatttttgctgcaactc
ctggagcggcaaccggagccggtgtcctgggagaaggtggcggatctactcgatatccgc
gacgccgaccgccgtgaaggggtgcgtcggcgcctgatcgccatgtcccgggacggccag
attgccagtaaccgctctggtgacttcggcgtgctggacaaaatgagcctgattcgcggc
cgggttatcggccaccgcgatggctttggctttgttgcgccgcgggatggtggcgacgac
ttatatctttctcaccggcagatgcgcaaggtcttcgacggtgacgaagtgctggtgcgc
gagacccccggcggcttccgcggcaagcgcgaggcggcggtggtgcgggtcatcaagcac
aatactcagcagttggccgggcgtctctatcgcgagaatggtatttgtttcgtgcgcccg
gataacccgcgcatcaacctcgatgtcatggttgccgaggaacacactgcaggtgccggc
cacggtcagtatgtggtggtaaagattgtcacccagccgggccgtgacaaggtgccgcaa
ggcgaggtcatcgaggtactcggcgaccatttggcgccgggtatggaaatagacgtagca
attcgcaactacgatatccctcacgtttggccggcggcggtgctgagcgaagtggaggct
attcccgatgaggtggtcgagggcgataagagcgggcgggtagatctgcgccagctgccg
ctggtgacgattgacggcgaggacgcgcgggactttgatgacgctgtctactgcgaagcg
ttaccggatggtggctggaaactgctggtggccattgccgacgtgtctcactatgtgcgt
ccgggcacacccctggacgaggaggcccacaaccgcggtaactccgtttatttcccggac
ttcgttgtgccgatgctgccggagaagctgtccaacggcctctgctccctcaatcccgag
gtggatcgcctgtgtatggtgtgtgaaatgcacattgaccgcgatggtgagatccgcgac
taccgcttcttcgaaggtgtgatgcgcagtcatgcacggcttacttatacccaggtgggg
cagataattgcggagcgcggcctccgcggttccggtctgcgcaaacagttcgcggcgtta
actccgcacctggacaatctgcacgacctctacaaggccctgcgctccgcccgcgaccgc
cgcggtgccatcgacttcgagaccactgagacgcgcattatttttgatgccaaccgcaaa
atagagcgcatagtgccggttgtgcgcaatgacgcgcacaagctcatcgaagagtgcatg
ctcgccgccaatgtgtgcgcggccaggctgatggagctggcggaagtgccagccctctac
cgggtacacgacgcgcccaaggaggagaagctcagcaatctgcgtgaatatttgggtgag
ctgggcctgcgcttacccggcggggccgagcctcagccgatggactttcagctgctgctg
gagcaagtggcggggcgcgccgatgcacatattatccagatgatgctactgcgctctatg
aatcaagccgtttaccagccggagaatcgcggccacttcgggctcgactatcccgcttac
gcccatttcacctcgccgatccgccgctatccggacttgctgttgcaccgcgcgctgcgc
tggttgattcgcaatggcgacgccaatgagcgcgcggtggctaaaaaagtgtattcggtg
cccggcgccaaggttattcctcgggaaaaaatcctgccctacgatatgccggccatggta
ttgctgggcgagcactgctccatgaccgagcgccgtgccgacgatgccacccgcgatgtg
gtcagctggctcaagtgtgagtatttgcaggaccgcgttggcgaggtctacaccggggtg
attagtgccgtcacgggtttcggtctctttgtcgaactggccgacctctacgtggagggc
ctggtgcatgtgacagccctgccgaaagactattaccgctttgagcaggcccatcagcgt
ctggttggcgagcgtagtggcaggcgttatcacctgggggattccgtgcgggttcaggtg
gcgcgggtggatttggatgagcgcaaggtggatttcacccttgaagagctgatgccacgg
gagcaggtcaaggtcagcgcccgcgcaatggaaatggcgctggagcaccagcgggaaaga
gataggcgaggcaagtcctcggcggctaagaaaagtggccccggtggcaggggcacagcc
agcccctgggccgggcgcgccgagcttccgcccgctgctgcccccatccgcaagcgcaag
gtcggcaccaccgaggcggtaccggtggaaacccggttgacggaaaatgcagctggaagt
gaagaggaaataccggcgaaaaagcgccgacgccccaaacgcacgccaccgcgcaaaggg
ggtaagcgcccggcggtcgcagcgcgcaaggcggcgcaacgggcggccaaagccaatggg
aaaaccatcaaggctaaaaaaaagaaaaagtcctctatcaagcgcaaaaagaaaaagtag
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