Microbulbifer thermotolerans: A3224_02415
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Entry
A3224_02415 CDS
T04393
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mthd
Microbulbifer thermotolerans
Pathway
mthd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mthd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A3224_02415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mthd03021
]
A3224_02415
03400 DNA repair and recombination proteins [BR:
mthd03400
]
A3224_02415
Enzymes [BR:
mthd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A3224_02415
Transcription machinery [BR:
mthd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A3224_02415
DNA repair and recombination proteins [BR:
mthd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A3224_02415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AMX01578
UniProt:
A0A143HIM9
LinkDB
All DBs
Position
584601..588830
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLNLVKSQEHLEEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTRAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTDPGMTSLERGQLLSDEQYFEAMEEWADEFEAKM
GAEAIQELMRDIDLPSEIQRLREEIPATNSETKIKKLSKRLKLLEAFYKSGNNPEWMIME
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRERINDKGEGMVFADIKEVSRAFYAK
QVGLQAKVKVRIREVEIGEDGEKREKCTLYDTTVGRALLWNIVPDGLGFELVNQPMKKKA
ISRILNECYRKVGLKATVIFADQLMYTGFDFSTKSGSSIGVNDFEIPAAKAELIAAAEAE
VKEIESQFASGLVTAGEKYNKVIDVWSRTNDKVTQAMMAGIRKEKVVDRTGNEVEQDSFN
SVYMYADSGARGSEAQIRQLAGMRGLMARPDGSIIENAITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITETDCGTDDGLTMAPVIEGGDVIESLGDRIL
GRVVARDVLKPGSDEIAVPAGTMIDEKWVERIEAMGIDEVIVRSPITCETAHGICAQCYG
RDLARGHRANPGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRASAADSIQVKQPGTVRL
HNVKTVKAESGALVAVSRSGELAVADSAGRERERYKLPYGAIINVADGAEVEGGQMVAKW
DPHTHPIITEVAGWVKLSGMEEGLSIRKQTDEITGLSSIEVIDPAERPAAGKDLRPAVTL
VDENGEEVTLANSKAPAHYALPPRAILSLKDGDKVNIGDVIARIPQESGGTKDITGGLPR
VADLFEARKPKEPAILAEISGTVSFGKETKGKVRLQITPADGKPLPNGKDHFEVLIPKHR
QLTVFEGETVEKGEVISDGPSNPHDILRLKGVEELARYITNEIQEVYRLQGVKINDKHIE
VIVRQMLRKVEILEMGDSEFIKGDQVEYQRVIEENERLRAEGKQPAQFERLLLGITKASL
ATESFLSAASFQETTRVLTEAAVTGKEDHLRGLKENVVVGRLIPAGTGLAHHAERRRKRS
LQQEEGFGEGPSAAEVEAALTEALKSSGD
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttgttaaacctggtgaagtcccaggaacacttggaagaatttgacgctatc
cgcatcggcctggcgtctccggacatgatccgctcctggtcctacggcgaagtgaaaaag
ccggagaccatcaactaccgcacctttaagcccgagcgcgaaggcctcttctgcgccaaa
atcttcggtccggtaaaggattacgagtgcctgtgtggcaagtacaagcgcatgaagcac
cgcggcattatctgtgaaaaatgcggtgtggaagtcaccagagccaaggtgcgccgcgag
cgcatgggccacattgaactcgcgagcccggtggcacacatctggttcctgaagtctctg
ccgtcccgcatcggtctgttgttggatatgaccctgcgcgatattgagcgggtgctctat
ttcgagtcttacgtggtcaccgatccgggcatgaccagcctcgagcgtggccagctgctg
agcgatgagcagtatttcgaggcgatggaggagtgggcagatgagttcgaggccaaaatg
ggggccgaggctatccaggagctgatgcgcgacatcgacctgccttccgaaatccagcgc
ctgcgcgaggagattccggccactaactccgagaccaagattaagaagctctccaagcgc
ctgaagctcctggaagctttctacaaatccggtaacaacccggagtggatgatcatggaa
gcgctgccggtgctgccgccggatctgcgcccactggtacccctggacggcggccgcttt
gcgacctctgacctgaacgatctgtaccgccgcgtgattaaccgcaacaaccgcctcaag
cgcctgttggagttgaacgcgccggatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtagacgcgctgctggacaacggccgtcgcggacgcgccatcaccggctccaat
aagcgcccgctgaagtccctggccgacatgatcaagggtaaacagggccgcttccgtcag
aacttgctgggtaaacgcgtcgactactctggccgttccgtaattgtggtgggtcctacc
ctgcgtttgcaccagtgcggcctgcccaagaaaatggctctggaactgttcaagccgttt
atcttcggcaagctggaagcccgcggcctggccaccaccatcaaggcggccaaaaaaatg
gtcgagcgtgaagaagccattgtgtgggatatcctcgatgaggtgatccgcgagcacccg
gtgctgctgaaccgcgctcccaccctgcaccggctgggtatccaggcctttgagccggta
ctgattgaaggtaaggcgattcagctgcacccgctggtatgtgcggcctataacgcggac
ttcgacggcgaccagatggcggtgcacgtgccgctgacgatcgaggcgcagttggaatcc
cgcgcgctgatgatgtccaccaacaacatcctgtctccggccaacggtgagccgattatc
gtgccgtcccaggacgtggtgctgggcctctactggatgacccgcgagcgcatcaacgat
aaaggcgagggcatggtctttgccgatatcaaggaagtgagccgcgccttctacgccaag
caggtgggcttgcaggccaaagtaaaagtgcgcattcgtgaagtggaaattggcgaagac
ggcgagaagcgcgagaaatgcaccctctacgacactactgtcggtcgcgcattgctgtgg
aatatagtgccggacggcctgggctttgagctggttaaccagccgatgaagaaaaaggct
atctcgcgcattctcaacgagtgctaccgcaaggtggggctgaaggcgacagtaattttc
gccgaccagctgatgtacaccggttttgatttctccaccaagtccggttcctccatcggc
gtaaacgactttgaaattccggcggccaaggctgaactgatcgccgccgccgaagcggaa
gtgaaggaaattgaaagccagttcgcctccggtctggtgaccgccggtgagaagtacaac
aaggtgatcgacgtctggtcccgcaccaacgacaaggtgacccaggcgatgatggccggt
atccgcaaagagaaagtggttgaccgcaccggtaacgaggtggagcaggactcctttaac
tctgtgtacatgtacgcggactccggcgcccgtggttccgaagcgcaaattcgtcagctg
gccggtatgcgcggcctgatggcgcgcccggacggctccattatcgagaacgccatcacc
gcgaacttccgcgaaggcctgtcggtattgcagtactttatttccacccacggtgcccgt
aagggtctggctgacaccgccttgaagaccgccaactccggttatctgacccgccgccta
gtagacgttgcccaggacgtggtgatcacagagaccgattgcggcaccgatgatggtctg
accatggcaccggtaatcgagggtggtgatgttatcgaatctctcggtgaccggattctc
ggccgagtggttgcccgcgatgtgctcaaaccgggtagcgatgaaatcgccgttcccgcc
ggcaccatgattgacgaaaagtgggtagaacgcatcgaggccatgggtatcgatgaggtt
atcgtgcgttcgccgatcacctgtgaaacggcccacggtatctgtgcccagtgctacggc
cgcgacctggcccgcggtcaccgcgccaaccccggtgaggcggtgggtgtggttgccgcc
cagtcgatcggtgagccaggtacccagcttacgatgcggaccttccacatcggtggtgcg
gccagtcgcgcctccgctgcggacagtattcaggttaagcagccgggtaccgtgcgtttg
cacaatgtgaaaaccgtgaaggccgaaagtggcgccctggttgctgtatcccgctccggt
gagctggcggtagctgacagcgccgggcgtgagcgggagcggtacaagctgccctacggt
gccattatcaatgtggcagacggcgcggaagttgaaggtggccagatggtggccaagtgg
gacccgcacacccacccgatcattaccgaagttgccggttgggtgaaactgtccggtatg
gaagaaggtctgtcgattcgcaagcaaaccgacgaaattaccggcctgtcctccattgag
gtgatcgatcccgccgagcgcccggcggcgggtaaagatctgcgtccggcggtaaccctg
gtggacgagaatggcgaagaagtgacactggccaacagcaaagcgccggcgcactacgca
ctgccgccgcgcgccatcctcagcctgaaagacggcgacaaggtgaatatcggtgatgtt
atcgcccgtattcctcaggagtccggtggtaccaaagacatcacaggtggtctgccgcgg
gtggcggacctgtttgaagcgcgtaagccgaaagagcctgccattcttgcagagatctcc
ggaactgtatctttcggtaaggagaccaagggcaaagtacgcctgcagatcactccggcg
gacggcaagccgctgccgaacggtaaggaccacttcgaggtactgattccgaagcatcgc
cagctgacagtgttcgaaggcgaaactgtggaaaaaggcgaggtgatctccgatggcccg
tccaatccgcacgatatcctgcgcctgaaaggcgtggaggagttggcgcgctatatcacc
aacgaaattcaggaggtttaccgcctgcagggtgtgaagatcaacgataagcatatcgaa
gtgatcgtgcgccagatgctgcgcaaggtggaaatcctcgagatgggcgactctgagttc
atcaagggcgatcaagttgagtaccagcgcgttatcgaggaaaacgagcgcctgcgcgcg
gaaggcaagcagccggcccagttcgagcgcttgttgctgggtatcaccaaggcttctctg
gccaccgagtccttcctgtccgcggcttccttccaggagaccacgcgcgtactgacggaa
gcggcagtgaccggtaaagaagaccacctgcgcggtttgaaggaaaacgttgttgtcggt
cgtttgattccggcgggtaccggcttggcgcaccatgccgagcgtcgccgcaagcgcagc
ctgcagcaggaggaaggttttggtgaggggccgtccgccgcagaggtggaggcagctctg
accgaggccctcaaatcctccggcgactaa
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