Microbulbifer thermotolerans: A3224_13795
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Entry
A3224_13795 CDS
T04393
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mthd
Microbulbifer thermotolerans
Pathway
mthd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3224_13795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthd03019
]
A3224_13795
Enzymes [BR:
mthd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3224_13795
Messenger RNA biogenesis [BR:
mthd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3224_13795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_22
CMS1
AAA_25
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMX03501
UniProt:
A0A143HPS8
LinkDB
All DBs
Position
complement(3350418..3351743)
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AA seq
441 aa
AA seq
DB search
MLFEDLGLVREIARAVTEKGYTEPTPIQAQAIPAVMAGGDIMAAAQTGTGKTAGFTLPLL
HRLSQGERARNGRVRTLVLTPTRELAAQVFDNVQDYSKYLPLRHAVVFGGVKINPQIARL
RGGADILVATPGRLLDLHGQGAVHFDKLEALVLDEADRMLDMGFIHDIKRILKLLPAKRQ
NLLFSATFSPEIRNLAKGLVKDPLEIDVSPRNTTTETVQQKLYPVDKGRKQKLLSHLIRE
NNWYQALVFSRTKHGANRLVKQLQADDITAAAIHGNKSQNARTKALADFKSGKVQILVAT
DIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGARGQAVSLVSADEIKQLRDIER
LIKMALPREEVAGFEPSQPLPESGGPAKGGRRRSGGKRPGDGGRGNGQRRRRNDSSQTPR
GDAQRPRRRRRPAHSSESASG
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgctatttgaagatctgggcttggtgcgggaaattgcccgcgctgtcacagagaaaggt
tatacggagccgactccgattcaggctcaggcaattcccgcggtgatggccggcggggat
attatggcggcggcgcagacaggtaccggcaagacagccggatttactctgccgctgttg
catcggttaagccagggagagcgcgcgcgcaatggccgcgtccgcaccctggtgctcacc
cccacccgcgagctggcggcgcaggtgttcgacaacgtgcaggattacagcaagtacctg
ccgctgcgccatgcagtggtttttggcggggtgaaaatcaatccgcagatcgcgcgcctg
cgcggtggcgctgatattctcgtggccactccgggccgcctgttggatctgcacggccag
ggggctgtgcattttgacaagctggaggccctggtgctggatgaggccgatcgcatgttg
gacatgggctttattcacgacatcaagcgcatcctgaaacttctgcccgccaagcgccag
aacctgctcttctccgcgaccttttcaccggaaatccgcaatcttgccaagggattggtg
aaagatccgctggagattgacgtcagcccgcgcaacaccaccacagagacggtgcaacag
aagttgtacccggtggacaaggggcgcaaacagaagctgttgagccatttgatccgcgag
aacaactggtatcaggctctggtgttcagccgcaccaagcacggcgccaaccgactggtg
aaacaattacaggcggacgatatcaccgctgccgccattcacggcaacaagagccagaat
gcgcgcactaaggcgctggcggattttaagagcggaaaggtgcaaatactggtggccacg
gatatcgctgcccgcggtatcgatatcgaccagctgccccaagtggtgaatttcgatctg
cccaatgtgccggaggattacgtgcaccgcataggccgcaccggtcgcgccggtgcccgc
ggccaggcggtatccctggtgagcgcggatgagatcaaacagctgcgggatatcgagcgg
ctgatcaagatggcgctgccgcgggaagaggtcgcgggatttgaaccgagccagccactg
ccggagtcgggcggcccggcgaaggggggcaggcgccgcagcggcggcaagaggcctggt
gatggcggtcgcggcaacggacagagacggcgccgcaacgacagtagccagactccgcgc
ggtgacgcccagcgtccccgccgccgccggcgcccggcgcacagcagcgaaagcgcatca
gggtag
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