Methanosarcina thermophila CHTI-55: MSTHC_0982
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Entry
MSTHC_0982 CDS
T03891
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mthe
Methanosarcina thermophila CHTI-55
Pathway
mthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSTHC_0982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthe03019
]
MSTHC_0982
03009 Ribosome biogenesis [BR:
mthe03009
]
MSTHC_0982
Enzymes [BR:
mthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSTHC_0982
Messenger RNA biogenesis [BR:
mthe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSTHC_0982
Ribosome biogenesis [BR:
mthe03009
]
Prokaryotic type
rRNA helicases
MSTHC_0982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Helicase_C_2
AAA_30
DUF4919
Motif
Other DBs
NCBI-ProteinID:
AKB15300
UniProt:
A0A0E3KR44
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All DBs
Position
1233727..1235442
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AA seq
571 aa
AA seq
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MEKLAKFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGNCDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGYVQAIILTPTRELAIQVSEELNSLKGDKKLHIFPIYGGQSMTQQLRM
LKSGVDIVVGTPGRVIDHLERKSLNLEHIKYFVLDEADEMLNMGFIDEIKEILKATGPEK
RMLFFSATMPKPILGIAKKYMRNYEYVAIEKEELVANLTEQIYFEVHENDKFEALCRIID
IEDEFYGLVFCRTKTDTAQLAQKLGDRGYTADALHGDLSQNEREKILNRFRKQKINILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK
KTSKSEMKKGRIPEIKDVIKAKRARVKAELEDIIKTEEYGDCLEMSEKLLDEYPAEKILA
ALLKYAFKEMFDESMYAEISRSSYVDRKGKTRLFIAMGKADGMTPEKLCEFIQEETGEKD
LMIRDAEIFPHFSFVTVPFAQAEALLEIFKDKKRGRKPLVELAQRSRGRNSRDTSESRSS
MRSDTPRSSYRNSSGNYARETRTERRSYSSY
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttggactttctgacagcatgttaaaagccctt
aaaaagaaagggtttgaagaaccaaccccaattcaggaaaaagttatcccgctttttttg
aaaggaaattgtgatattatagggcaggctcagacaggaaccggtaaaacaacggctttt
ggagcccccattatagaaaaaatccccgaaaaatcaggttatgtacaggcaataatcctg
actccgacccgagaactggcaatccaggtttcagaagaactaaactccctgaaaggagac
aaaaagctgcatatcttcccgatatatggaggacagtccatgacccagcagctcaggatg
ctaaaaagtggggttgatatcgttgtgggaactcctggaagggtaatagaccaccttgag
cggaagagcctgaaccttgagcacattaaatatttcgtactggacgaagccgacgagatg
ctcaatatgggctttattgacgaaattaaagagatcttaaaggcaaccggacctgagaag
cgcatgcttttcttttcagctacaatgccgaaacccatccttggcatcgccaaaaaatac
atgcggaattatgagtatgttgccattgagaaagaagaacttgttgcaaacctgaccgag
cagatctactttgaggttcatgagaatgacaaattcgaggccctgtgcagaattatcgat
attgaggacgaattctatgggcttgtgttctgcaggacaaaaaccgataccgctcaactt
gcccagaaacttggagacagaggatacacagccgatgccctgcacggcgacctttcccag
aatgaaagggagaagatcctgaaccggttcaggaagcagaagataaatattcttgtagca
accgacgttgcagcccgcggtatcgatataatggacctgacccacgttatcaactattcc
ctgcctcaggacccagaatcctacgtgcacaggataggaaggacgggcagagcaggaaag
caaggaactgcaatcactttcgtgacatccacggaatacaggcggctcacttatattaaa
aagacgtcaaaatctgaaatgaagaaaggtcgaatccccgagataaaggacgtaataaaa
gccaaacgagcaagagtaaaagccgaactcgaagacattataaaaactgaggaatatggc
gactgccttgaaatgagcgaaaagctccttgacgaatacccagccgaaaaaattttggct
gccttgttgaagtacgctttcaaggagatgttcgatgaaagcatgtacgcagaaatttct
agaagctcatacgtcgaccggaaaggcaaaaccaggcttttcattgccatgggtaaagcc
gacggcatgactcccgaaaagctgtgcgagttcatacaggaagaaaccggagaaaaggat
ctgatgatcagagatgccgaaatattcccacacttttccttcgtaacagtgccctttgct
caagccgaagccctgctagagatcttcaaagacaaaaagagaggtagaaaacctcttgta
gaacttgcccagagatcaagggggagaaactcaagggataccagtgaatctcgcagcagc
atgcgcagcgacactcctcgcagcagttaccgcaatagcagcggaaattacgcaagagaa
acaagaactgagaggagaagttattcttcatactaa
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