Methanosarcina thermophila CHTI-55: MSTHC_1108
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Entry
MSTHC_1108 CDS
T03891
Name
(GenBank) DNA repair helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mthe
Methanosarcina thermophila CHTI-55
Pathway
mthe03022
Basal transcription factors
mthe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mthe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSTHC_1108
09124 Replication and repair
03420 Nucleotide excision repair
MSTHC_1108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mthe03021
]
MSTHC_1108
03036 Chromosome and associated proteins [BR:
mthe03036
]
MSTHC_1108
03400 DNA repair and recombination proteins [BR:
mthe03400
]
MSTHC_1108
Enzymes [BR:
mthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
MSTHC_1108
Transcription machinery [BR:
mthe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MSTHC_1108
Chromosome and associated proteins [BR:
mthe03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
MSTHC_1108
DNA repair and recombination proteins [BR:
mthe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MSTHC_1108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Zot
PhoH
HBB
HTH_56
TIP49
ATPase
nSTAND3
AAA_34
Motif
Other DBs
NCBI-ProteinID:
AKB15426
UniProt:
A0A0E3NCP6
LinkDB
All DBs
Position
1379750..1382074
Genome browser
AA seq
774 aa
AA seq
DB search
MTQKNGYMRYFTKESCYPNQAEAMERIHSAILQEKIVLFEGACGTGKTLSALAPSLSVGK
KLNKVVIIVTNVHQQMVQFINEAREISRVNDIKTIVFKGKTSMCPENLDYEECRLKGENT
YDLLDLEREISSKEKELKDVYEKHKRTKDPALYALRNELEKELEEARTKAQALRNNSCPK
LYEVLRFEGNEFSTWLFSDVRSPEEVLEYAEDRDMCGYELLKKELKNTELLICNFHHVLN
AEIFMTLLKWLERDPEDIILIFDEAHNIEASARSHSSITLSELTIEKALSEVGETPEQDN
SPFFRAGADSSIGIPLDQDYEARLYAKKLFTCFLTALRDTYDSKLKFGERNRLGKNWQDI
QISDPYERFDILKARFLRSAVKEGFEDEEKVLIRLREIGELGGRLEEIYAENYKKGLLSV
LKRSHIRYVADFLSSYLVLSDRQNYYPILNVRKDFKSDRIVGRIELFTCIPKNVTQPLLD
SVYAAVLMSATLRPFEMIKSTLGITREVEEISYGTTFPSERRLTLAVSVPPLFAKNRDSP
KTLESLKEALLAAITASPGNVIIYFQSYAEALRYTKLLEPELSIPIFLDETGVSAKEIRE
KFFRIGEQGGKALLVTYLWGTLSEGVDFRDSRGRTVIVVGVGYPALNDRIKAVESAYDTV
FGCGEGWEFAVQVPTIRKVRQAMGRVVRSPEDYGVRILLDSRYQGSQARKLGKFSVFDYF
PPEERKEFIDVAPKDAGSLVEDFFAHITADNPKKEELESQASSRLDFRSLAEKL
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagaagaacggatatatgcggtattttacaaaagaaagttgctaccccaaccag
gcagaagccatggagagaattcattcagctatcctgcaggagaaaatcgtgctttttgaa
ggagcctgcgggacaggtaaaactttgagtgcacttgctccttctttgagtgtgggaaaa
aaactcaataaggtcgttattatagtcacaaatgtccatcagcagatggttcagtttata
aatgaggcaagagagatctcccgggttaacgatataaaaacaattgtttttaagggcaag
acttctatgtgccctgagaatcttgattatgaagaatgcaggcttaaaggggaaaataca
tatgatctccttgaccttgagagggaaatttcctcaaaggaaaaagagctaaaggacgtt
tatgagaagcacaaacgaacaaaagaccccgccctttacgccctgcgaaatgagcttgaa
aaagaactggaagaggcaaggacaaaagctcaggctttaaggaacaactcctgtccaaag
ctttatgaagtgctgagatttgaaggaaacgaattctccacctggcttttttccgatgta
agaagtccggaagaagtgcttgaatatgcagaagaccgcgacatgtgcgggtacgagttg
cttaaaaaggaacttaaaaataccgaacttctaatctgcaatttccatcatgtgctcaat
gccgaaatctttatgactctacttaaatggcttgaacgcgaccctgaggatattatcctg
atttttgatgaggcacataatattgaagcgtctgctcgctcccattcttcaataacactc
tcagaactgactattgaaaaagccctttctgaagtaggtgagactcccgagcaggacaat
tctccttttttcagggcaggagctgattcgagcatcggcattcctcttgatcaggactat
gaagctcgattatatgcgaaaaagctgtttacctgttttctaaccgccctcagagataca
tatgactcgaaattgaaattcggggaaagaaacaggcttggtaagaactggcaggacatt
cagataagtgacccttatgaacgttttgacatcctgaaagcccgctttttgcgtagtgca
gtaaaagaagggtttgaggatgaagaaaaggtgcttattcggttacgcgaaattggtgaa
ctcggtggaaggctggaagaaatatatgctgaaaattacaaaaaagggctgctttccgtc
ctgaaacgttcccacatacgctatgttgcggattttctatcttcttatcttgtgctttca
gacagacagaactattatcctatcctgaacgtgcgaaaagatttcaaaagtgacaggata
gttggcaggatagagctttttacatgcatccctaaaaatgtaactcagcctttgctggat
tccgtttatgcagcagtgctcatgtcggctacactccgcccctttgaaatgatcaaatct
acacttggcatcacaagggaagtggaagaaatttcttacggcactacctttcccagtgaa
agaaggctcacacttgcggtttcagttcctcctctttttgcaaagaaccgagacagtcca
aaaacacttgagagccttaaagaagctttgcttgcagctattactgcatcacccggaaac
gtaattatttatttccagagctatgctgaagcgctccgttatactaaactcctggagcct
gaactttctattcctattttccttgacgagacaggggtttcagctaaagaaatccgcgaa
aagttctttagaataggggagcagggaggaaaagccttacttgtaacctatctctgggga
acactaagcgaaggtgttgatttcagggattcaagaggcaggacagtaattgtggttgga
gtgggatatccggctttaaacgaccgtatcaaagctgtcgaatctgcctatgacacagtt
tttggttgtggggaaggctgggaatttgcagtccaggtgccgacaatcaggaaagtcaga
caggcaatgggaagagtagtacgctccccggaagattatggagtaaggattcttctcgat
tcccgctatcagggctcccaggcacgtaaactcgggaaattttcggtttttgattatttc
ccgcctgaagaaaggaaagaattcattgatgtcgcgccaaaagatgcgggcagtctcgtg
gaagatttttttgcccatataacagcagataatcccaaaaaagaggagctggaatcccag
gcttctagtcggctggattttagaagccttgcagagaagctttga
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