Mixta theicola: C7M52_00311
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Entry
C7M52_00311 CDS
T06402
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mthi
Mixta theicola
Brite
KEGG Orthology (KO) [BR:
mthi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mthi03009
]
C7M52_00311 (rlmD)
Enzymes [BR:
mthi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C7M52_00311 (rlmD)
Ribosome biogenesis [BR:
mthi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C7M52_00311 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_11
UPF0020
MTS
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_15
CMAS
Methyltransf_23
DOT1
Motif
Other DBs
NCBI-ProteinID:
QHM74385
LinkDB
All DBs
Position
322622..323938
Genome browser
AA seq
438 aa
AA seq
DB search
MAQFYSAKRRVTTRQTITVTIHELDAFGQGVARHQGKTLFVSGALPGEQVEVALLEDKRH
YARGRAQRILQPSPERVAPRCRWFGTCGGCQQQHASQTLQQQSKADALAHLLTRETGRQT
TVDEIIGDAAYGYRRRARLGLQYQAKTQTLQMGFRKVASSELVSIDCCPILQPELESLLL
PLRECLASLQAVRRLGHVELVRADNGPLMVLRHLDPLSAADRQKLERFSHQHGLALFLAA
DSEQTEQVSGDWPCYQSHQLRLTFNPRDFIQVNDAVNQKMVAKALAWLDLQPQDRLLDLF
CGMGNFTIPAAKIAGNVVGVEGVAALTARGAYNARLNGLENITFFHENLEEDVTRQPWAA
HGFDKVLLDPARAGAGGVMQHIAKLAPQRVVYVSCNPTTLARDSQVLLSAGYRLERVAML
DMFPQTSHLESMVLFSKT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactccgcaaaacggcgtgtgacgacccggcaaacaataaccgtcact
attcacgaactcgatgctttcgggcagggcgtggcgcgtcatcagggtaaaacgctgttt
gtcagcggcgcgctgccgggcgagcaggtagaggtggcgctgctggaggataaacgccac
tacgcccgcggacgagcgcagcgtattttgcagcccagcccggagcgggtcgcgccgcgc
tgccgctggttcggcacctgcggcggctgccagcagcagcacgcctcccagacgctgcag
cagcagagcaaggccgacgcgctggctcatctgttgacgcgcgagaccgggcgacagacg
acggtggatgagattatcggcgacgcggcctacggctatcgccgccgcgcccgccttggc
ctgcagtatcaggccaaaacgcagaccctgcagatgggctttcgcaaggtcgcttccagt
gagctggtttcgatcgactgttgccccattttgcagcctgaactggaaagcctgttgctg
ccgctaagagaatgtctggcatcgctacaggcggtgcggcggctggggcacgttgagctg
gtgcgggcggacaacggcccgctgatggtgctgcgccatctcgatccgctaagcgccgcg
gatcggcaaaagctggaacggttttcgcatcagcacgggctggcgctgtttctggcggcg
gatagcgaacagacggagcaggtaagcggcgattggccctgttatcaatctcatcagctg
aggttaacttttaacccgcgcgattttattcaggtgaacgacgcggtaaatcaaaaaatg
gtggcgaaggcgctggcatggctcgatttgcagccgcaggatcgcctgctggatctgttt
tgcggcatgggaaatttcacaattccagccgcaaaaattgcaggaaatgtcgtgggtgtg
gagggtgtagcagctttaacggcgcgaggtgcgtataatgccaggctgaatggtctggaa
aacatcactttttttcatgagaacctggaagaagatgtaacgcgtcagccctgggcggcg
cacggttttgataaggtgttactggaccccgcgcgtgccggtgcgggcggcgtaatgcag
catatcgctaaactcgcgccgcaacgcgtggtttatgtttcctgtaacccaactacactt
gcccgggacagccaggtgctgctgtcggccggttatcgcctggaaagggtggcgatgctc
gatatgttcccgcagacgagccaccttgaatccatggtgttattcagtaaaacgtaa
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