Mixta theicola: C7M52_01873
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Entry
C7M52_01873 CDS
T06402
Symbol
rne_1
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mthi
Mixta theicola
Pathway
mthi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7M52_01873 (rne_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthi03019
]
C7M52_01873 (rne_1)
03009 Ribosome biogenesis [BR:
mthi03009
]
C7M52_01873 (rne_1)
Enzymes [BR:
mthi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C7M52_01873 (rne_1)
Messenger RNA biogenesis [BR:
mthi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7M52_01873 (rne_1)
Ribosome biogenesis [BR:
mthi03009
]
Prokaryotic type
rRNA processing factors
C7M52_01873 (rne_1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QHM75915
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All DBs
Position
2099838..2103248
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AA seq
1136 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPASYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRDAVSAIEKRQGGVKAIIVPNDQME
TPHYSVLRVRSGEETQTLSYHLPKLHEAEMALPSEDEHAERRRPEQPALAAFVMPDTPPA
PQESPAVSEPKAKAPAQQPVAAQAAAPAAAGGIIGRLLGGLKKLFAGESAAPAAAEKPQE
AKQNNETATQQRERRNANNNRRGNNNRRDRNRDRNAEAAAPQQARETREEPRRSKRQQPN
AEVRDERQTTLTDEARAQREEQQQQRREQRAERQRRRQEERRQQQEAAKAAAQQEQEQLA
VAPTESEESVAEERVQVMPRRKPRQLAQKVRIESAETAPAEEIAPAVAQPAAEDAKAAAA
PVEAPQPTEAQADESEEQENRDSGNMPRRSRRSPRHLRVSGQRRRRYRDERYPSQSPMPL
ASGAASPEMASGKVWVRYPVAQANHLNNEELKEASEQSREEHVAVALPIAASEAVIEPAA
EQVVQQAEPQQFSAPVTPVDTHDASAIEVPVNQQPSVIPAAAEARAEHVAAQAEPAKAVD
EAVETQPKPAAVSQIVEPQPVAEAEARTAVPEAQQAADIAVQSAADVSAETAAQVEQVLN
APAIEPQATLPVSEPHAPVAARDEAPAAVEVEQPQPAPVAEAASRQPVASQDEARASVMS
GKHHASAPMTKAPAPAWQPEAPRHSSWERPPFHFEGKGAAGGHSATHQATAPATRP
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgttaataaacgcaactcaacaggaggagttgcgtgttgcgcttgtggat
ggacagcgtctgtacgatctggatatcgaaagccccggacacgagcagaaaaaggccaac
atctataaaggaaagatcacccgcatagaacccagcctggaagcggcttttgttgattac
ggcgccgaacgacacggtttccttccgttaaaagaaatttcccgcgagtatttccccgcc
agctacagcgcgcacggccgtcccaacattaaagatgttctgcgcgaaggccaggaagtt
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggccctgaccaccttcatc
agcctggccggcagctatctggtgctgatgccgaacaacccgcgcgctggcggtatctcc
cgccgtatcgaaggcgacgatcgcaccgagctgaaagaggcgctctcctcgcttgagctg
ccggaaggcatgggcttaatcgtacgcaccgctggcgtcggtaaatccgccgaggcgctg
cagtgggatctcagcttccgcctgaagcactgggaggcgattaaaaaagcggcggaaaac
cgccccgcgcccttcctgatccatcaggaaagtaacgtgatcgtacgcgccttccgcgac
tatctgcgccccgatatcggcgaaatcctgattgataaccctaaagtgctggagctggcg
cgtcagcatatcgccgcgctgggccgtcccgacttcagcagcaaaattaagctctacacc
ggcgagatcccgctgttcagccattatcagatcgaatcgcagatcgaatccgccttccag
cgcgaagtgcgcctgccgtccggcggctccattgttatcgactctaccgaggccctgacc
gctatcgatatcaactcggcgcgcgccacgcgcggcggcgatatcgaagagacggcgttt
aacaccaacctcgaagcggccgatgagattgcgcgccagctgcgcctgcgcgatctcggc
ggcctgatcgttatcgactttatcgatatgacgccggtacgtcaccagcgcgcggtagaa
aaccgcctgcgcgaggcggtgcgtcaggatcgcgcccgtattcagattagccatatttcg
cgcttcggcctgctggagatgtcgcgtcagcgcctcagcccgtcgctgggcgaatccagt
catcacgtctgcccgcgctgtagcggcaccggcaccgtacgcgataacgaatcgctgtcg
ctctctattctgcgtttgattgaagaagaagcgctgaaagagaataccaaagaagtccat
gctatcgtgccggtgccgatcgcctcctatctgcttaacgaaaaacgtgacgccgtcagc
gccatcgaaaaacgtcagggcggcgtaaaagcgattatcgtaccgaacgatcagatggaa
accccgcactactcggtgctgcgcgtacgcagcggcgaagagacgcagaccctgagctac
catctgccgaaactgcacgaagcggaaatggcgctgccgtcggaagatgagcacgccgaa
cgccgtcgccctgagcagccggccctcgccgcttttgtgatgccggatacgccgccggcg
ccgcaggaaagccctgccgtcagcgagccgaaagcgaaagcgccggcccagcagccggtc
gccgcgcaagccgccgcgcctgccgccgccggcggtattatcgggcgcctgcttggcggc
ctgaaaaaactgtttgccggggaatccgccgcgcctgccgctgcggaaaaaccgcaggaa
gcgaagcagaacaacgaaacagccacgcagcagcgtgagcgtcgcaacgccaacaataac
cgtcgcggcaacaataatcgtcgtgaccgcaaccgcgatcgtaacgctgaagcggcagcg
ccgcagcaggcgcgcgaaacgcgcgaagaaccgcgtcgcagtaagcgccagcagccgaac
gccgaagtacgcgacgagcgtcaaaccactctgaccgacgaagcgcgcgcgcagcgcgaa
gagcagcagcagcagcgccgcgaacagcgcgccgaacgccagcgtcgccgtcaggaagag
cgtcgtcaacagcaggaagccgcgaaagccgccgctcagcaggaacaagagcagctggcc
gtcgcgccgacggaaagcgaagagagcgtagcggaagagcgcgttcaggtaatgccgcgc
cgtaagccgcgtcagctggcgcagaaagtgcgtatcgaaagcgcggaaaccgcgccggcg
gaagagatcgcgccggctgtcgcacagcccgccgctgaggatgcgaaagctgccgccgcg
ccggttgaagcgccgcagccgactgaggcacaggcagacgaatcggaagagcaggaaaat
cgcgatagcggcaatatgccgcgccgttcacgccgttctccgcgtcatctgcgcgtcagc
ggtcagcgccgccgtcgctaccgcgacgaacgctatccgtcacagtcgccgatgccgctc
gcctctggcgccgcgtcgccggaaatggcctccggtaaagtctgggtgcgttatccggtc
gcccaggctaaccacctcaataacgaggagctgaaagaggcgtcggaacagagccgcgaa
gagcacgtcgccgtcgcgctgccgattgccgccagcgaagccgttatcgagccggcagcg
gaacaggtagtgcagcaggctgagccgcagcagttcagtgcgccggttacgccagtggat
acgcatgacgcttccgccatcgaggtgccggttaatcaacagccttcggtcattcctgcc
gctgcagaagcccgcgcagagcatgtcgccgcgcaggctgaaccggctaaggcggtcgac
gaagctgttgaaacccagccgaaaccggccgccgtttcgcagattgtggagccgcagcct
gtagctgaagctgaggcgcgcaccgctgtaccagaggcgcagcaggccgcagatattgct
gttcaaagcgccgccgacgtcagcgccgaaaccgccgctcaggttgagcaggtactgaac
gcgccggcgatcgaaccgcaggcgacgctgccggtcagcgaaccgcatgcgccggttgcc
gctcgtgacgaagcgcctgccgcagttgaggttgaacaaccgcagcctgcgccggtagca
gaagcagcaagccggcagcccgtcgcatcacaggacgaggcacgcgcttcggtgatgtcc
ggcaagcaccacgccagcgcgccgatgaccaaagcgccggctccggcatggcagcctgaa
gcgccgcgccacagcagctgggagcgcccgccgttccactttgaaggcaaaggcgccgcc
ggtggacacagcgccactcatcaggcgacggctccggctacccgcccctga
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