Methanothermobacter sp. THM-1: FZP57_00610
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Entry
FZP57_00610 CDS
T06420
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mthm
Methanothermobacter sp. THM-1
Brite
KEGG Orthology (KO) [BR:
mthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mthm03016
]
FZP57_00610
Enzymes [BR:
mthm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FZP57_00610
Transfer RNA biogenesis [BR:
mthm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FZP57_00610
Prokaryotic type
tRNA splicing ligases
FZP57_00610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QHN05729
LinkDB
All DBs
Position
complement(126322..127770)
Genome browser
AA seq
482 aa
AA seq
DB search
MEVREELVKVRDSVWEVPTSYKKGMRVPGRIFLKEEALKDLERGAVDQVANVACLPSIQK
FSIGLPDIHFGYGFSIGGVAAFSSRTGVISPGGVGFDINCGVRMVRTNLDHSEVRAKIKE
LVNTLFRNVPSGVGSKGKIRLRPGEIDEVLENGAEWAVENGYGWEQDLKFLEENGKMDEA
DPDKVSDKAKKRGIPQLGSLGSGNHFLEVQMVDEIYDEGVAEAFGITPGKVAVMIHSGSR
GCGHQVCSDYLRVMDKAYRRYKINLPDRQLACAPVDSDEARDYFQAMAAAANYAWANRQM
IVHWVRESFESIFGMSAEDMEMEIVYDVAHNIAKKEVHTIKGRETEVFVHRKGATRAFGP
GRKELPSEYRSTGQPVIIPGTMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTY
RGEAVQKNLESQGIYVKATSMPVVAEEAPGAYKDVDIVVKTAHETGISRMVARMVPLGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggaagtaagggaagaacttgttaaggttagagattctgtatgggaagttccaacatca
tacaagaagggaatgagggttcctggaaggattttcctgaaggaagaggccctgaaggac
cttgaaaggggtgctgttgaccaggttgccaacgtggcctgcctccccagcatccagaaa
ttctcgataggactgccggatatacacttcggatacggattcagcatcgggggcgtggca
gccttcagcagccgtacaggagttataagtcccgggggagtgggttttgacataaactgt
ggtgtcaggatggtcaggacaaaccttgaccattctgaggtccgtgcaaagataaaggag
cttgtaaacacactcttcaggaacgttccctcaggggttggcagcaagggcaagataaga
ttaaggcccggtgaaatcgacgaggtccttgaaaatggtgctgaatgggctgttgaaaac
ggatatggctgggaacaggaccttaaattccttgaagaaaacggtaaaatggatgaggca
gaccctgataaggtcagtgataaggcaaagaagagggggataccccagctcggatccctc
gggtcagggaaccacttccttgaggtccagatggtggatgaaatatatgatgagggggtt
gcagaggccttcggcataacccccggaaaggtagccgtgatgatacattcaggttcccgt
ggatgcggccatcaggtgtgttcagattacctcagggtaatggacaaggcctacaggcgg
tacaagataaaccttcccgacaggcagcttgcatgcgcccctgtggattcagatgaggcc
agggactacttccaggcaatggccgctgcagcaaactatgcatgggcgaaccgtcagatg
atagtccactgggtcagggagtcctttgaaagcatcttcggtatgagtgcagaggacatg
gagatggagatagtctatgacgtcgcccataacatagccaaaaaggaggttcacacaata
aaagggcgtgaaacagaggtcttcgtccaccggaagggcgctacaagggccttcggaccc
ggaaggaaggagctgccatcagagtacaggagcacgggtcagcccgtgataatccccggc
accatgggcacatcatcctatctccttcacggtacagaggttgccatggaggaaaccttc
ggttcaacagcccacggggccggaaggaagatgagccgtgccggtgcaaaaaagacctac
cgtggagaggccgtccagaagaaccttgaaagtcaggggatatatgtgaaggccacatcc
atgcccgtggtggcagaggaagcccctggagcatacaaggacgttgatattgtggttaaa
acagctcatgagacaggaatatcccgtatggtggccaggatggtcccgcttggtgttgca
aagggataa
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