Methanothermobacter sp. THM-1: FZP57_02385
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Entry
FZP57_02385 CDS
T06420
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mthm
Methanothermobacter sp. THM-1
Pathway
mthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FZP57_02385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthm03019
]
FZP57_02385
Messenger RNA biogenesis [BR:
mthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FZP57_02385
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QHN06028
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Position
430755..432107
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AA seq
450 aa
AA seq
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MSVEVIAIGGYEEVGKNMSAVKVGDDVVIFDMGIHLDRVHIHEDMDIARMHSLDLIERGV
IPDDTLMKDVDGKVRAIVFTHGHLDHIGAVAKLAHRYQAPIIATPYTIALIERTIKAERK
FNVLNTLQVLNAGEKCQISPGITLEFIQSTHSIPQSVIAALHTPEGIIVYALDFKFDDHQ
KISPPPDYHRLRELGRKGVLAMIVETTRATEKQEVKTHSEKVARIVLEDIMKNPLEEKTG
MIVTTFSSHMERIQAISDIAAKSDRQMLLLGRSMERYCGLAEAMGILKLPENASIYGSPK
AVNRALARAEAKREDYLLITTGHQGEPDALLPRIANAKTQFRIQRGDNVVISAPVIPNPM
NVANRNLMERRLASSGARIYTNAHVSGHAGREDHRDFIRMLNPMHIIPAHGDLNMLSAYA
EVAEEEGYKLGNDIHILRNGQAQVFNGGIR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgttgaagtaattgcaatcggtggatacgaggaagttggaaagaacatgtccgcc
gttaaagttggagatgatgttgtaatatttgatatggggatccaccttgacagggtccat
atacatgaggacatggacatagcaaggatgcacagtcttgacctcattgaaaggggggtt
atacccgatgacacgctgatgaaggacgttgatggtaaggtaagggccatagtattcacc
cacggacaccttgaccatataggggccgttgcaaaacttgcccacagataccaggcaccg
ataatcgcaacgccctacaccatagccctcatagagaggaccataaaggccgagaggaag
ttcaacgtcctcaacaccctccaggtccttaacgcaggggagaagtgccagatatccccg
ggcataaccctggagttcatccagtcaacacacagcataccccagtcagtcatagcagcc
ctccacacaccggagggtataatagtctacgcccttgacttcaaattcgatgatcaccag
aagatatcccctccacctgactaccaccgcctcagggaactcgggaggaagggcgtcctt
gcaatgatcgttgagaccacaagggcgacagagaagcaggaggtcaaaacacactcagag
aaggttgcaaggatagtcctcgaggatataatgaagaaccccctcgaggagaagacaggg
atgatcgtaacaaccttctcctcccacatggaacgtatccaggccataagtgacatagcc
gccaagagcgacaggcagatgctgctccttggaaggtcaatggagcgctactgtggactt
gcagaggccatgggcatactcaagttacctgaaaatgcaagcatatacggaagccccaag
gcagttaacagggcccttgcccgtgcagaggcgaaacgcgaggactacctcctcataaca
acgggccatcagggggaacccgacgccctcctcccgaggatagccaatgcaaagacccag
ttcaggatacagaggggggataacgtggtaatatcagcccccgtcatcccgaaccccatg
aacgtggcaaacaggaacctcatggagcgcagactggcctccagcggtgcaaggatctat
acaaacgcccatgtatcaggccacgcaggcagggaggaccacagggacttcataaggatg
cttaaccccatgcacataataccggcccacggtgacctgaacatgctctctgcctatgca
gaggtggctgaggaggaaggatacaagctgggtaacgacatccacatactgaggaacgga
caggcacaggtttttaatggaggtatccgatga
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