Methanothermobacter sp. THM-1: FZP57_04890
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Entry
FZP57_04890 CDS
T06420
Name
(GenBank) DEAD/DEAH box helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
mthm
Methanothermobacter sp. THM-1
Brite
KEGG Orthology (KO) [BR:
mthm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthm03019
]
FZP57_04890
Messenger RNA biogenesis [BR:
mthm03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
FZP57_04890
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
DEXQc_Suv3
Motif
Other DBs
NCBI-ProteinID:
QHN06455
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All DBs
Position
complement(947105..949594)
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AA seq
829 aa
AA seq
DB search
MIILNRRKRSVDFIPAGKPSGALNTRRKPPFWGRLKVQKTGSGPRIARFTIERDGKESLR
KPSEALKLMKKQAVFLTGHDEELEELLSAYGIRYRHTRVCQHCLHEGYVTVVNSRSSTVY
SGQRICSRCVDEVIKRELRYSGLDVLVYRNLRRLIRRGIPLEEVLEVISPRFDPLDNRRL
TLYDTVTSGADRTPQVPVDKLGIPEGFIRILKREGNRVLRPVQVLAVDSGLLEGEDLMVV
SATASGKTLIGELAGIPRAMAGERFIYLTPLVALANQKYRDFKGRYSRLGLKTAIKVGMS
RIRAREELKIPETDPSSSDIIVGTYEGFDYILRSGGAERLGRVGVVVVDEIHTLEDEERG
SRLNGMIRRIKGLFPEAQIIALSATVKNTEEIASDFGLRLVEYDRRPVPLERHIVFSRSP
EEKKNLILRLAEREFSLKSERGFHGQTIIFTNSRRKTRLIAEYLTRNRVSAAAYHAGLSY
RERQRIEKAFASQKLAAIVTTAALAAGVDFPASQVIFETLLMGNRWLTANEFSQMLGRAG
RPSYHDRGIVYVLAEAGMEFDGETEEVKALELLESGPDPVDVHYSEEDVLEHILADVSSG
ALRRRSDISGDGSWILEPGRALEILESYGMITTESGIEVTPYGMAVSRSFIKPGDAEYIR
SNLQGNPLDVALEMEPFTSAYLSGRLHRKLSQAVKAKFSTRLMADSTLDILSGGDNLVKL
DSRLQEAVLKLQMDFLSCECRERPFCGCIQSKLSRHIIDRRLRGEDPADISRGLLSGYQI
QAYPGDIFSWLDSTVRTLEAVKRIASAFRKKKTVRECSRIIRGIEMGRI
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgataattttaaacaggagaaaaaggtcagttgattttatccctgcaggaaaacccagc
ggagccctcaacacccgcaggaaacccccattctgggggaggttaaaggtccagaagaca
gggtccggtccaaggatagcgaggttcaccatagaaagggatgggaaggaaagcctcagg
aaaccctcagaggcacttaaactgatgaagaaacaggcagtcttcctcacgggccatgat
gaggaactcgaggaactcctatcagcctacggtatcaggtacaggcacacaagggtctgc
cagcactgcctccatgaggggtacgttactgttgtgaattcaaggtcatcaacggtgtac
tccggccagaggatatgctcaaggtgcgttgatgaggtgatcaagagggaactcaggtac
tcgggccttgatgtcttggtatacaggaatctcaggaggctcatcaggagggggataccc
ctcgaggaggtccttgaggtcatatcaccccgttttgacccccttgataacaggagatta
accctctatgatacggtcacctcaggggctgacaggacaccacaggtcccggtggataaa
ctggggattcccgagggattcataaggatacttaaaagggagggtaaccgtgtactgagg
ccggtgcaggtacttgcggttgattcgggcctccttgagggtgaggatctcatggtggta
tctgcaactgcaagtggaaagacactaataggtgaacttgcaggcataccccgggcaatg
gccggtgaaaggttcatatacctcacacccctcgtggcactggcaaaccagaaatacagg
gactttaaggggagatactcacgtctcggtcttaaaacagccataaaggttggtatgagc
aggataagggcccgtgaagaactgaagattccggaaaccgatccgtcatcttctgacatc
atagtgggtacctatgagggctttgattatatcctgaggtcaggaggggctgagagactt
ggcagggtaggggtggttgtggtggatgagatacacacccttgaggatgaggagaggggt
tcgaggcttaacgggatgataaggaggataaaggggttattccctgaggcccagatcata
gcactctctgcaaccgtgaagaacactgaggagatagcctcggattttggtctgagactc
gttgagtatgatagaagacccgtaccccttgagaggcacattgtattttcaaggagccct
gaggagaagaagaacctcatactcaggcttgcagagcgggagttctccctgaagtcagag
agaggattccatggccagaccataatcttcacaaactcacggaggaagacgaggctcatt
gcagaataccttacaaggaacagggtcagtgcagctgcctaccatgcgggtctatcctac
agggaaaggcagaggatagagaaggcgttcgcctcccagaagcttgctgccattgtaaca
acagccgcccttgcagctggagttgattttccagcatcacaggttatttttgagacgctc
cttatgggtaaccggtggctgacggccaacgagttttcacagatgcttggaagggccggg
aggccatcctatcatgacaggggaattgtatatgtccttgcagaggctggaatggaattt
gatggagaaacagaggaggtgaaggcccttgaactccttgaaagcggaccggaccctgtt
gatgtccactattctgaggaggatgttcttgaacacatccttgcagatgtaagttcaggg
gcactcaggaggaggtccgatatctcgggggatggctcatggatccttgaacccggaaga
gcccttgaaatccttgaatcctatggtatgatcaccacagagagtggaattgaggtcaca
ccctacggtatggccgtatcaaggtccttcatcaaaccaggggacgccgagtacatcagg
tcaaacctccaggggaacccccttgacgttgcccttgaaatggaacccttcacatcagcg
tacctttcagggagactccacaggaagctgagtcaggcagtgaaggctaaattttcaacg
aggctgatggcagattcaacccttgacatactctcagggggggataaccttgttaaactg
gatagcagactccaggaggctgttctgaaacttcagatggacttcctatcatgtgagtgc
agggaaaggcccttctgtggctgtatccagagtaaactgtcccgtcatataatagacagg
aggctgaggggggaggaccctgctgatataagcaggggacttctatcaggatatcagatc
caggcctatccaggggatatattcagctggcttgactcaaccgtacggacccttgaggcg
gttaaaaggattgcatcagcattccggaagaaaaagactgtaagggagtgttcaaggatc
ataaggggtatagagatggggcggatatga
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