Mycolicibacterium thermoresistibile: 4412656_03332
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Entry
4412656_03332 CDS
T05542
Symbol
deaD
Name
(GenBank) Cold-shock DEAD-box RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mthn
Mycolicibacterium thermoresistibile
Pathway
mthn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4412656_03332 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthn03019
]
4412656_03332 (deaD)
03009 Ribosome biogenesis [BR:
mthn03009
]
4412656_03332 (deaD)
Enzymes [BR:
mthn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4412656_03332 (deaD)
Messenger RNA biogenesis [BR:
mthn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
4412656_03332 (deaD)
Ribosome biogenesis [BR:
mthn03009
]
Prokaryotic type
rRNA helicases
4412656_03332 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
HEM4
CMS1
Cas3-like_C_2
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
SNW19488
LinkDB
All DBs
Position
1:complement(3527406..3529121)
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AA seq
571 aa
AA seq
DB search
MTSPEADVSGTDPTFADLQIHPAVLRAVGDVGYETPSAIQAATIPAMMAGSDVVGLAQTG
TGKTAAFAIPILSKIDTASRATQALVLAPTRELALQVAEAFGRYGAHLPDVQVLPIYGGS
SYTVQLSGLRRGAQIVVGTPGRVIDHLDRGTLDLSRLDYLVLDEADEMLQMGFAEDVERI
LADTPEYKQVALFSATMPAAIRKLTTKYLHDPVEVTVKARTATAENITQRFIQVAGPRKM
DALTRVLETEPFEAMIVFVRTKQATEELAERLRSRGFAAAAINGDIAQAQRERTIAALKD
GSLDILIATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGNALLFVTPRE
RHLLKAIEKHTRSKVLEAEMPTVDDVNAKRVAKFRDAISEALSSPQIDLFRGLIEDYERD
HDVPLADIAAALAVQTRDGDEFLMVEPPPEQRRERSERRDGRERRDRPPRRGDQKMATYR
IAVGKRHKVGPGHIVGAIANEGGLHRSDFGHITIRADYSLVELPAKLPRKALKALEHTRI
SGVPIDLRLDRGPAHGPNRGPGRGGGKRKDR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgacctcccctgaagccgacgtgagcggcaccgatccgactttcgctgacctgcagatt
cacccggcggtgctgcgggccgtcggggacgtcggatatgagacgccgtcggcgatccag
gcggccaccattccggcgatgatggccggatccgatgtggtcgggctggcgcagacgggc
accgggaagaccgcggcgttcgcgatcccgatcctgtccaagatcgacaccgccagccgg
gcgacccaggcgctggtgctggccccgacgcgggaactcgcgctgcaggtcgccgaggcg
ttcggccggtacggcgcccacctgcccgatgtccaggtgctgccgatctacggcggctcg
tcctacaccgtgcagctgtccgggttgcggcgcggcgcgcagatcgtcgtcggcaccccc
ggccgggtcatcgaccacctcgaccgcggcaccctcgacctgagccggctggactacctg
gtgctcgacgaggccgacgagatgctgcagatgggcttcgccgaggacgtcgaacgcatc
ctcgccgacacccccgagtacaagcaggtcgcgttgttctcggcgacgatgccggccgcg
atccgcaagctgaccaccaagtacctgcacgatccggtcgaggtcaccgtcaaggccagg
accgccaccgccgagaacatcacccagcggttcatccaggtggccgggccgcgcaagatg
gacgcgctgacccgggtgctggaaaccgaaccgttcgaggcgatgatcgtgttcgtccgc
accaaacaggccaccgaggagctcgccgaacggctgcggtcccgcgggttcgccgcggcg
gccatcaacggcgacatcgcgcaggcccagcgggaacgcaccatcgccgcgctcaaggac
ggcagcctcgacatcctcatcgccaccgacgtggccgcccgcgggctcgacgtcgaccgg
atctcgcacgtcgtcaactacgacatcccgcacgacaccgagtcgtatgtgcaccgcatc
ggccgtaccgggcgggccggacggtccggcaacgcactgctgttcgtcaccccgcgggaa
cggcatctgctcaaggcgatcgagaagcacacccggtcgaaggtcctcgaggccgagatg
cccaccgtcgacgacgtcaacgccaagcgggtggccaagttccgagacgccatcagcgag
gcgctcagctccccgcagatcgacctgttccgcggcctgatcgaggactacgaacgcgac
cacgacgtgccgttggccgacatcgcggccgcgctggcggtgcagacccgcgacggtgac
gagttcctgatggtcgagccgccgccggagcagcgccgggagcggtccgagcgcagggac
ggccgggagcgccgggaccggccgccgcgccggggcgaccagaagatggcgacctaccgc
atcgcggtgggcaaacggcacaaggtggggcccgggcacatcgtcggcgcgatcgccaac
gagggcggcctgcaccgcagcgacttcggtcacatcaccatccgggctgactactcgctg
gtggaactgcccgccaaactgccccgcaaggcgctgaaagcccttgaacacaccaggatc
tcgggtgtgccgatcgaccttcgtctggaccggggcccggcgcacgggcctaaccggggt
ccgggccgcggcggagggaagcggaaagacagatga
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