Methanosarcina thermophila TM-1: MSTHT_0310
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Entry
MSTHT_0310 CDS
T03892
Name
(GenBank) putative exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
mthr
Methanosarcina thermophila TM-1
Pathway
mthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSTHT_0310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthr03019
]
MSTHT_0310
Messenger RNA biogenesis [BR:
mthr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSTHT_0310
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSTHT_0310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AKB12068
UniProt:
A0A0E3KNU8
LinkDB
All DBs
Position
complement(374024..374815)
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AA seq
263 aa
AA seq
DB search
MSEVIATLKKDYIYNLMIKGKRQDGRGFKDFRDIKLETNVIAKAEGSAKVTLGNTQVLVG
VKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDI
KKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTIIPNEQQGIGPNVPLPMK
ELPVGVTLAKIGSKLMVDPSLDEEAVCETKLTVVSGSDGAVVGMQKMGSAPLTEAEVLEA
IDIACEKAAELRELYLKDLVRQE
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagttattgccacacttaagaaggactacatttacaaccttatgattaagggg
aaacgccaggatgggcgcggctttaaagatttcagggatatcaagctcgagacgaatgtt
atcgcaaaagctgagggttcggcaaaagtgacattgggaaatacccaggtgcttgtaggt
gtcaagcttcagacaggaaccccttttccggattctcaggacgaaggcgtgattattacc
aacctggaactcaatcctattgcttcccccgagtttgagccgggcccacccagagaagaa
gcaatcgagatggcaagagttgtagacaggggaatccgggaatcgggcgcaattgatata
aagaagctttgcataaccgttggagaatccgtctggatcgtctttatagatgtccacgtc
ctcaatgacgatggaaatatcattgatgcatcctgtctcgctgctattgcggctcttatg
accactattatcccaaacgagcagcagggaatcgggccaaatgtgccccttccaatgaaa
gaacttcctgtgggcgtgactcttgccaagataggttcaaagctcatggtggacccttct
ctggatgaggaagccgtttgtgagacaaaactgactgtggtctcaggttcggatggagcc
gttgtaggcatgcaaaaaatgggctctgctcctttaaccgaggctgaggtgctggaagca
atcgatatagcgtgcgaaaaggcagccgaactcagggaactttacctgaaggatctggta
agacaggaatga
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