Methanosarcina thermophila TM-1: MSTHT_0312
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Entry
MSTHT_0312 CDS
T03892
Name
(GenBank) putative exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
mthr
Methanosarcina thermophila TM-1
Pathway
mthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSTHT_0312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthr03019
]
MSTHT_0312
Messenger RNA biogenesis [BR:
mthr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSTHT_0312
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSTHT_0312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
DUF4655
Motif
Other DBs
NCBI-ProteinID:
AKB12070
UniProt:
A0A0E3NAR7
LinkDB
All DBs
Position
complement(376389..377171)
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AA seq
260 aa
AA seq
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MDKKIVIPGDLLSENSKKAGYGTYVKNDKIYSLFCGIESLKEDKVGVIPLAGAYIPSVND
VVIGVVIAVTPSNWIMDIASPYEGLFHVSEYPRRIEPQEMSEVLDVGDSVILRVKDVDSS
MKVELALRDSTLHKLKTGHIVEIEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDDDVELLSRALRKIEAEAQHSGLTDRVYNFIKNEKSKQKESKPAKFFKSEKKEEKLP
KEDHSEEIYRKIDVLLDPKN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgctatccgaaaattccaagaaagccgga
tacgggacttatgtcaagaacgataagatctattctttgttttgcggtattgaaagtctt
aaagaggataaagttggagtgatccctcttgcgggagcctatatcccttccgtgaatgat
gtagtgatcggggtcgttattgcggttacgccatccaactggataatggatattgcctct
ccttatgaaggcctgttccatgtatctgagtatcccagaagaatagaaccccaagaaatg
tccgaagttctggatgtaggcgactctgtaattctcagagtaaaagatgtagacagttct
atgaaagtcgagcttgccctccgggattcaaccctccataaacttaaaacaggccatatt
gtcgaaattgagcctgtaaaagtcccacgtgtgatcggacatggcggttccatgatctca
atgctgaagaaagagacaaactgtagcatttttgttggccagaacggtagaatatggatc
gatggaaaggacgacgatgtggagcttttaagcagggctctcagaaagatcgaagccgaa
gcccagcattccggattgacagatcgggtctacaatttcataaaaaatgagaagagtaaa
caaaaagaatctaagcccgctaagttttttaaaagcgaaaagaaagaggaaaagctgcct
aaagaagatcattccgaagaaatttacaggaagatcgatgtgctgctggatccaaagaac
tga
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