Methanosarcina thermophila TM-1: MSTHT_1000
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Entry
MSTHT_1000 CDS
T03892
Name
(GenBank) DNA-directed RNA polymerase subunit B'
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
mthr
Methanosarcina thermophila TM-1
Pathway
mthr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mthr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSTHT_1000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mthr03021
]
MSTHT_1000
Enzymes [BR:
mthr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSTHT_1000
Transcription machinery [BR:
mthr03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
MSTHT_1000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_45
DmmA-like_C
DUF1451
Motif
Other DBs
NCBI-ProteinID:
AKB12758
UniProt:
A0A0E3N8Q1
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All DBs
Position
1247329..1249143
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AA seq
604 aa
AA seq
DB search
MAKAKVFINGELVGTHDNPAELVEELRKMRRQGFISRQVNVALNDNTREVIINSDMGRAR
RPLLVVENGALKITPDHIERLKNKEITFDDLVKEGCIEYLDAEEEENAYIALYEADITPK
HTHMEIDPELILGISTGMVPYPEHNSSPRNTMGAAMIKQCIGVATANQKLRPDTRAHILH
YPQKALTTTRTSDAIGFDDRPAGQNFVVAVLSYEGYNIEDALVINKGSIERGLGRSHFLR
TFEGEERRYPGGQEDKFEIPDSEYRGARSAEAYANLDVDGLVNPETPVGPNDVLIGKTSP
PRFLEEPSDFGIAVEQRRESSVTMRSNEKGIVDTVILTESINRTRLAKVKVRDERIPDIG
DKFASRHGQKGVIGLKVPIADMPFTESGLTPDLIINPHAIPSRMTVGHVLEMIGGKVASM
EGRRVNATAFSGEKEEDLREALKRHGFAHTGKEIFYDGATGRMIPADVFVGVILYQKLHH
MVTSKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLVGHGAAMSLKERLLDESDK
VVELVCSHCGMIATYDKQRNISFCSACGADTDIYPVEMSYAFKLLLDEIKSLGVAPRLNL
EDAV
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagcaaaagtattcataaacggggagcttgtcggaacccatgataaccctgca
gagcttgtagaagagctcagaaaaatgaggcgtcagggattcatatccagacaggtaaat
gtcgctcttaacgataacacaagagaagtaattataaactccgatatgggcagagcaaga
aggcccctcttagttgtggagaacggagctctgaaaataacccctgatcacatagagaga
cttaagaacaaggaaatcacttttgatgacctggtaaaagagggctgtatagagtatctc
gatgccgaagaagaagaaaatgcctatattgcgctctatgaggctgacattactccaaag
cacacgcacatggagatcgatcccgaacttatattagggatttctacaggaatggtgcct
tatccggaacacaattcatctccgcgtaacactatgggtgcagccatgatcaagcagtgt
atcggggttgcaactgctaaccagaaactcagacctgatacccgcgcccatatccttcac
tatcctcaaaaggcacttaccactaccagaacctcggatgcaataggctttgacgataga
cccgcagggcagaacttcgtggttgcagtcctgtcttatgaaggatataatattgaagat
gccctggttattaacaaaggctcaatcgaaagaggtcttgggagaagtcacttcctcaga
actttcgaaggtgaagaaagaaggtatcctggcggacaggaagataagtttgagattccc
gattccgaataccgtggagctcgcagcgcagaagcgtatgctaatctggatgtcgatggg
cttgtaaacccagagaccccagtcggacctaacgacgtgctgatcgggaagaccagccct
ccaagattccttgaagaaccgtcagatttcgggattgcggttgagcagaggagagaaagc
tctgtcaccatgcggtccaacgaaaaaggaattgttgatacagttattttaaccgagtcc
attaacagaacgagacttgcaaaggtaaaggtaagagacgaaagaattccagatatagga
gataaattcgcctcaagacacggacaaaaaggtgttataggtcttaaagttccgattgca
gatatgccgtttacagaatccggtctaacccctgacctgattattaacccgcatgcaatt
ccttcccgtatgactgtaggtcacgttctggaaatgattggcgggaaagtagcttccatg
gaaggccgaagagtaaatgcgacagctttctccggagaaaaagaagaagaccttagagaa
gccctgaaaaggcatgggtttgcccataccggaaaagagattttctacgatggagcgaca
ggcagaatgattccggcagatgtctttgttggggttattctctaccagaaactgcaccat
atggtcacttccaagatgcatgcaaggtcacgcgggcctgtacaagtgcttactcgccag
ccaactgaaggtcgagccagagaaggtggtctcagattcggagaaatggagcgtgatgtg
ctggtagggcacggagctgccatgtcgttgaaagagaggctgcttgatgaatcggataaa
gttgtggaacttgtctgctctcactgtggaatgattgcaacgtatgacaagcagcggaat
atttcattctgctcagcctgcggggctgacacggacatatatcctgtggaaatgagctac
gcattcaaactgctgcttgacgaaataaaatccctgggagtcgcacccaggcttaatctt
gaagatgcggtatga
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