Methanosarcina thermophila TM-1: MSTHT_1663
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Entry
MSTHT_1663 CDS
T03892
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mthr
Methanosarcina thermophila TM-1
Pathway
mthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSTHT_1663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthr03019
]
MSTHT_1663
03400 DNA repair and recombination proteins [BR:
mthr03400
]
MSTHT_1663
Enzymes [BR:
mthr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSTHT_1663
Messenger RNA biogenesis [BR:
mthr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSTHT_1663
DNA repair and recombination proteins [BR:
mthr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSTHT_1663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Helicase_Sgs1
ResIII
HTH_23
Sigma70_r4_2
Terminase_5
Motif
Other DBs
NCBI-ProteinID:
AKB13421
UniProt:
A0A0E3NC32
LinkDB
All DBs
Position
2016535..2019240
Genome browser
AA seq
901 aa
AA seq
DB search
MKTSTEYNFLNASKHELEPEPSLSARMYSALRQYFGYTSFRPLQEEIIRDVLEKKDVFVL
MPTGGGKSMCYQLPALLFDGVTIVVSPLISLMKDQVDGLEANGIAAACMNSTQSAREIRD
VKTAFLENRLKILYIAPERLMTPGTFSFLKKGKISLFAIDEAHCISEWGHDFRPEYRKLK
LLRDPKTGFPHIPIIALTATATERVREDIISQLNLNIAPEKGPYIASFNRKNLYYEVRPK
KNTFSEITDYLRRHRGEAGIIYCQSRNSVEALTKKLNLAGFRALPYHAGLSDADRARNQE
MFIKDDVDIIVATIAFGMGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGGPCECILFF
SRGDRFKIEYFISQKTNEKEKDIALMQLRQMVAYCEGNKCRRQTLMEYFGEILLEPCGNC
DNCLTPKGTFDGTEAAKKLITCIQELNQRFGTNYVIDILTSSKNKKIRQNRHEKLKSYGI
GREFTKEQWRSLASEMINTGLLNVSGAKYPVLKLNAMSRKILRGTERVELVCPEGFVPEA
KEHSMSSSIAACIEGKKADDLCYPVEGSSEGGLSEKFSVAADILKNIEARKNLKSGKEPD
PILFERLKALRKEIALKKNLPPYIIFSDTTLKEMAAKFPRNHEEFHSITGVGDHKLRKYG
DVFLKEIENYCRDYNLMPDGKPESPETTRRDPEYEGITSEEIVPNGNDSEAEIGIIGTKM
PDSEADDMSSLETGGLLTKRRKYLDTSIQDWSERNPLTGNSGEIDSAETLPESESVNVIK
ANPVEPVLSETDSLERTLSLFQKGFSVDEIAEIQGMNTRTVFRQLEELALTGNIRDTGGV
FPPGRQLQVKNALESLELEMDSLIRARIGENCQEEEMKFIKALLLSRICFSRPENSPENS
E
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacgagtaccgaatataatttcttgaatgctagtaaacatgaacttgagcccgag
ccctccctgtctgccagaatgtactcagccctgcgccagtatttcggatatacctctttt
cgccctttgcaggaagaaattatcagggatgtccttgagaaaaaagatgtttttgtgctc
atgcctactggtgggggcaaatcaatgtgctatcagttacctgctcttctctttgacggg
gttacaatcgttgtttctccactgatttccctgatgaaggatcaggttgacgggcttgaa
gcaaacgggattgctgccgcctgcatgaacagtacccagagtgctagagaaattcgggat
gtgaaaaccgcttttctcgaaaacaggttaaaaatcctttatattgctcccgaaaggctc
atgacgccaggaacattttcttttttaaagaagggaaagatcagcctatttgcaattgac
gaggctcactgcatttccgagtgggggcacgatttccgacctgagtatagaaaattgaaa
cttttgagagatccgaagacaggatttcctcatattccgattatcgcgctcacggcaaca
gctacagaaagagttcgagaagatattatatcgcaactcaaccttaatattgctccggaa
aaagggccttacatagccagttttaaccgtaaaaatctttattatgaggtcagaccaaag
aagaatactttttccgagatcaccgattaccttcgccggcatagaggtgaagcaggaatc
atctactgccagagccgaaacagtgtcgaagcacttacaaaaaaactgaatcttgctggg
ttcagggctcttccttaccatgcgggactttcagatgccgatagagcccgaaaccaggag
atgttcattaaagacgatgtggacatcatagtagctacaatcgctttcgggatgggtatt
gataagtctaatgtacgtttcgtaatacactatgaccttcccagaaatcttgagagctat
tatcaggagactggcagaggcggaagggatggcggtccctgtgaatgcattctttttttc
agcaggggggaccgtttcaagatagaatactttatctcacagaaaacaaacgagaaggag
aaagacattgctcttatgcagttaaggcagatggtagcttattgtgagggaaataaatgc
aggcgccagactttaatggaatactttggagagattcttttagaaccttgtgggaactgt
gacaactgccttactccgaaaggtacttttgatggaacggaagctgcaaagaaattgata
acctgcatccaggagttgaaccagcgctttggcactaattatgttatcgatattctcaca
agctcaaaaaataaaaaaatccggcaaaatcgacatgaaaaattgaaaagttacggcatt
ggtcgggagtttactaaagaacaatggaggtcgttagcttccgaaatgataaataccggt
ctcctaaatgtgagcggcgcgaagtatcctgtattgaaacttaacgcaatgagcaggaag
atattgagagggacggaacgagttgagcttgtctgtcctgaaggctttgtgcctgaagct
aaagaacactcgatgtcttcttcaatagctgcctgtatagaaggcaaaaaagctgatgat
ttgtgttaccctgtagaagggtcttcagaagggggtctctcagaaaaattttcagttgcg
gctgatattctgaaaaatatagaagccagaaagaatctaaaatcaggaaaagagcctgat
cctattctttttgagcggttaaaagctctgagaaaggaaattgccctaaagaaaaatctt
cctccttacatcattttctctgacaccacacttaaggaaatggctgcaaagtttccgcgc
aatcatgaggaatttcattccattacaggggttggagatcataaattgaggaagtacggg
gatgttttcctcaaggaaattgagaactattgtagagattataatttaatgcctgatgga
aaacctgaaagtccagaaactacccgcagagaccctgaatatgaggggataacatcagag
gaaatagttccaaatggtaatgattccgaagctgaaattgggattattgggactaaaatg
cctgattctgaagctgatgacatgagcagcttagaaactggcggcttactaacaaaaagg
agaaaatatctggacacgagcattcaggactggtcagagagaaacccattgacaggcaac
tcaggagaaatagactcggcagaaactttacctgaatcagagtctgtaaatgtgatcaaa
gcaaaccctgttgaacctgttctttctgaaacggattcccttgaaagaactctttctctc
tttcagaaggggttcagtgtagatgagattgctgaaatccagggaatgaatacccgaacc
gttttcagacaacttgaagagctcgctcttactggaaatatcagggatactggaggagtc
tttcccccgggaagacagttacaggtaaaaaatgcactggaatccctcgagctggaaatg
gattccttgattagagccagaataggtgaaaactgccaggaagaagaaatgaaatttatc
aaggctttacttctgtccagaatctgcttttctcgacctgagaacagtcctgagaacagt
gagtga
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