Methanosarcina thermophila TM-1: MSTHT_1808
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Entry
MSTHT_1808 CDS
T03892
Name
(GenBank) Replication factor A (ssDNA-binding protein)
KO
K07466
replication factor A1
Organism
mthr
Methanosarcina thermophila TM-1
Pathway
mthr03030
DNA replication
mthr03420
Nucleotide excision repair
mthr03430
Mismatch repair
mthr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mthr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSTHT_1808
03420 Nucleotide excision repair
MSTHT_1808
03430 Mismatch repair
MSTHT_1808
03440 Homologous recombination
MSTHT_1808
03460 Fanconi anemia pathway
MSTHT_1808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mthr03000
]
MSTHT_1808
03032 DNA replication proteins [BR:
mthr03032
]
MSTHT_1808
03400 DNA repair and recombination proteins [BR:
mthr03400
]
MSTHT_1808
Transcription factors [BR:
mthr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MSTHT_1808
DNA replication proteins [BR:
mthr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MSTHT_1808
DNA repair and recombination proteins [BR:
mthr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MSTHT_1808
MMR (mismatch excision repair)
MSTHT_1808
DSBR (double strand breaks repair)
HR (homologous recombination)
MSTHT_1808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Ssb-like_OB
REPA_OB_2
OB_MEIOB_N
TriTu
POT1PC
SHLD2_OB1
RecG_wedge
BRCA-2_OB1
Motif
Other DBs
NCBI-ProteinID:
AKB13566
UniProt:
A0A0E3KZ34
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All DBs
Position
2210362..2211816
Genome browser
AA seq
484 aa
AA seq
DB search
MTDVESIYKKLSHVISKEDFLQRVQRKMESMGGLCDEPMAAMLVANELGFSDVSRENVKI
KDIKADSGPVNFIARVLSVFDAKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDSMADLIK
VGKIKVGQTLQISGYAKQGYSGVEVNVGNNGVITESEEEIDVVASSQKIKDVKDGMGDLN
LIGKVLEVSEIRTFQRKDGSTGKVGSLLLGDATGTIRVTLWDEKTEFLNQIEYGDTVELI
NAYARENAFSQKVELQVGSRSIIRKSEKEIEYKEKFTPIADISADMNDVNVCGRVLDIGE
IRTFEKRDGSTGRVGNLLIGDSTGKIRLTLWDEKTDFLDEIDFDETIEVLHAYSRENAFN
QQVELNLGSRGIIQKSEKEIEYREKFTDIADIVPGESYSVQGKVSEIGELREFEREDGTE
SVVANLQLEDETGSIRITLWGEQAYVIEDLDIDSEIQIINAYAKYGLNEEIELSVGNRSR
VIIL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgttgaatcaatatataaaaagctcagccatgtcatcagtaaagaagatttt
ctgcagcgtgtccagagaaagatggaaagcatgggcgggctttgtgatgaacctatggct
gccatgctggttgccaatgaactaggattttcagatgtaagtcgggaaaatgtaaagatt
aaggacattaaagctgacagcggaccggttaactttattgcaagagtattatcggttttt
gatgccaaggaatttacccggaatgatgggacgataggaagggtgggaaatttaattgtc
ggagatgagaccggaaaaataaagcttactctctgggacagtatggcagatctcatcaag
gttggaaaaatcaaagtagggcaaaccctccagatcagcggctatgcaaagcaaggatac
tccggagtggaagtcaatgtaggaaataatggagtcataaccgagagtgaagaagaaatc
gatgtggttgcaagcagccagaagattaaggatgtaaaggatggcatgggagacctgaat
ttgataggtaaagttctggaagtctcagaaataaggactttccagagaaaagacggcagc
actggaaaggttggaagtctgctccttggggatgcaacaggcacaatcagagtgacatta
tgggatgagaaaaccgagtttctgaaccagatagaatatggagatactgtggagcttatc
aatgcttacgcccgggaaaatgcatttagtcagaaagttgagcttcaggtaggaagccga
agtataatccggaaaagtgaaaaggaaattgagtataaggagaaatttaccccgattgca
gatatcagtgctgatatgaatgatgtcaatgtttgtgggagggtactggacattggggaa
attcgcacctttgagaaaagagatgggtccaccggaagagtcggaaatctccttattggg
gattccacaggaaaaatcaggctgactctctgggatgaaaaaaccgactttctggatgag
attgattttgacgagacaatagaagtactccatgcctattctcgggaaaatgctttcaac
cagcaggtggagctgaatcttggaagcagagggataatccagaaaagtgagaaggaaatt
gagtatagagaaaagtttacggatatcgctgatattgtcccaggggagagttactcagtc
caggggaaagtttccgaaattggagaactccgggagtttgagagggaagatggaaccgaa
agtgtggttgcaaatctgcaacttgaagacgaaaccggtagcataaggataactctctgg
ggagagcaggcatatgttatcgaggatcttgatattgattccgagatacagattattaac
gcatatgcaaaatatggtctgaacgaggaaatcgagttgagtgtcgggaaccggagcaga
gtgattatactttga
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