Neomoorella thermoacetica DSM 2955: MOTHA_c00850
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Entry
MOTHA_c00850 CDS
T06429
Symbol
mfd1
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mthz
Neomoorella thermoacetica DSM 2955
Pathway
mthz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mthz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MOTHA_c00850 (mfd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mthz03400
]
MOTHA_c00850 (mfd1)
Enzymes [BR:
mthz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MOTHA_c00850 (mfd1)
DNA repair and recombination proteins [BR:
mthz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MOTHA_c00850 (mfd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AKX95463
LinkDB
All DBs
Position
79944..83495
Genome browser
AA seq
1183 aa
AA seq
DB search
MYNNSILQIIRDSEQFYAIAGGLRRGAGEVQLYGLPEGMKGLWLAAMLDEFNPILVVTPG
SEEAQRLAADIESFWPGEGIDYLPPSELLPLEVYTPSPELAAQRLKVLTNLVSGRTRILV
VPVEDLLRKLPPPDTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEVVEAPGQLAVRGG
IIDIFPLGAEEPVRLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPAQEVLPPPDLGPGL
ETLKAEFSQTYATLRQRQPQAARELKDRVQELIAMLEAGSWPGGSSQLQPFFYPRQATLF
EYFQRQPLLVLDDPARLLEEMRRREQQRLGIFTDMLAAGLALPSQGQAYLDSADLERLWQ
RYQRLYFSLLPRRVPGSNPRPAVGISAQTIPAFQGKLGLVVEELTRWRREGYRIILMVAD
PNRVVALRQALAEQGIEALTHPEARDTLGRGEVIMVSGRLRQGFTWPEMRLAIIGDTEIY
GPIRRPRRVKTPREGSKISSFTDLKEGDYVVHVHHGIGRYLGLQQLDVGGVKKDYLLIQY
AGKDRLYVPVDQVSLVQKYVGGEGHVPRLYRLGGNEWNKVKSRVQEAVQEMAQELLDLYA
RREAIPGHAFGPDTPWQREFEEAFPYTETPDQLRAIAEVKADMEKPRPMDRLLCGDVGYG
KTEVAMRAAFKAVMDGMQVAVLVPTTILAQQHYETFKARFAPFPVKIAVLSRFCSPREQK
VVVEALKRGEVDIVIGTHRLLSSDVNFKNLGLVIIDEEQRFGVAHKEKLKQLRYSVDVLT
MTATPIPRTLHMSLAGVRDMSMIETPPEDRFPVQTYVVEYNPELVREAIRRELDRGGQVF
IVHNRVQDIDRFAYHIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVEN
GLDIQNANTLIVDESDNFGLAQLYQLRGRVGRTNRLAYAYFTYRPDKVLGEIAEKRLAAI
REFTAFGSGYKIALRDLQIRGAGNFLGPEQHGHMVAVGFDLYCQLLEEAVRKLKEQRGEG
VPRPALAEPQATPIELSVDTFLGDNYIPEATLKMELYHRLMNAGDLAAVEDIAAEMEDRY
GPPPPEARNLLALTRVRILAREVGVISVNQKNREVELSFGQHTGLRGEKLLQLNQYFPRK
LAFSSAGGLTIRVRVMGLSQEELLDLLEKVLTRIKYLVTEAAS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgtacaataacagcatattacaaattatcagagatagcgaacaattttacgccatcgcc
gggggcctgcgtcggggcgcaggcgaggtgcagctttatggcctgccggaagggatgaag
ggcttgtggctggcggctatgctggatgaatttaaccccattctggtagtcacccccggg
agcgaagaagcccagcgcctggcagcggatatagaatccttctggccgggggagggcatt
gactacctgccgccgtctgagctcctgccgttggaggtttatacccccagcccggaactg
gccgcccagcgcctgaaggtcctgacgaacctggtcagcggccggacccgcatccttgtg
gtgccggtggaggacttgctccgcaagctgccgccgccggataccctgcgccattccctc
cagtccctggaggtaggccagattattgaccgcgaggcccttttgcagaaattaactggc
ctggggtacaggcgggaagaggtggttgaggccccgggccagctggcggtaaggggaggt
attattgatatcttccccctaggagccgaggaaccggtgcgtttagaattatttggcgat
gaaatcgattccttgcgccgctttgaccccgtcagccagcgctcggtggccgacctgcgg
gctatagtcgtggggccggcccaggaagtcctcccgcccccggacctggggccggggctg
gaaaccctgaaggcagaattttcccagacctatgccaccctgcgccagcgccagccccag
gccgccagggaactgaaggaccgggtccaggagttgattgccatgctggaggctggttcc
tggcccggtggtagcagccagctccaacccttcttttacccccggcaggccacccttttt
gaatacttccagcgccaacccctgctggtccttgacgacccggctcgtctgctggaagag
atgcgccgtcgggagcaacagcgcctgggaatttttaccgatatgctggccgctggcctg
gctctgccctcccagggccaggcctatctggatagcgccgacctggaacggttgtggcag
cgctaccagcgcctgtatttctccctgctaccccgtcgggtaccggggagcaatccccgg
ccggcagtaggtatcagtgcccagaccataccggctttccagggtaaactcggcctggtg
gtagaagaattgacccgctggcgccgcgaggggtaccggatcatcctgatggtagctgac
ccgaaccgggtggtagccctgcgccaggccctggccgagcagggtatcgaggccctgacc
catcctgaggccagggacaccctgggacggggagaggtaataatggtctccggccgcctg
cgccagggctttacctggccggagatgcgcctggccattatcggggatacggagatctac
ggcccgatcaggaggccgcggcgggtcaagacgccccgcgaaggaagcaagattagctcc
tttactgacctcaaagagggagactatgttgtccacgttcaccacggtatcggtcgttac
ctgggcctgcaacaactggacgtaggcggggttaaaaaggactacctcctcattcaatat
gcgggcaaggaccgcctctatgtacctgtggaccaggtttccctggtccagaagtatgtc
ggcggtgaggggcatgttccccgcctgtatcgcctgggcggcaatgaatggaacaaggtc
aagagccgggttcaggaggccgtccaggagatggctcaggaactgctggacctttatgcc
cgtcgggaggccatccccgggcatgcctttgggcccgataccccctggcagcgggaattc
gaggaggcattcccttatacggaaacgccggatcagctccgggccatcgccgaggttaag
gccgatatggaaaagccccggcccatggaccgcctcctttgcggcgacgtgggctacggc
aagacggaagtggctatgcgggcggccttcaaggcggtcatggatggtatgcaggtggct
gtcctggtacccaccactatcctggcccagcagcattacgagacctttaaagcccgtttt
gccccttttccggtaaaaatcgccgtattgagccgcttttgttcgcccagggaacaaaag
gtagtcgtggaggctttaaagcggggtgaggtggatatagttatcggtacccaccggctt
ctctccagcgatgtaaattttaaaaacctcggcctggtgattatcgatgaggaacagcgc
ttcggcgttgcccataaagaaaagctgaagcaattgcgttacagcgttgacgtcctgacc
atgacggctacccctataccccggaccctgcatatgtccctggccggcgtacgcgatatg
agtatgattgagacaccgcccgaagaccgcttccccgtccagacctatgtggtggagtat
aacccggagctggtgcgggaggccatccgccgggaactggatcgaggcgggcaggtcttt
atagttcataaccgggtgcaggatattgatcgcttcgcctaccatattcagcaactggtg
ccggaagcccgggtcggcatcggccacggccagatgggcgaagaagagctggagaatgtg
atgctggactttatctccggccgctacgacgtcctggtcagtaccacgatcgtggaaaac
ggtctggacattcagaatgccaataccctgattgtcgatgagagtgataacttcggcctg
gctcagctctaccagctccggggccgggtcggccgcaccaaccgcctggcctatgcctac
ttcacctaccggccggacaaggtactcggtgaaatagctgaaaaacgcctggccgctatc
cgggagtttacggctttcggttcggggtataagattgccctgcgggacctgcagatccgg
ggtgcaggtaatttcctggggcccgagcaacacggccatatggtggccgtcggctttgac
ctctactgccagctcctggaggaagcagtccgcaaactgaaggagcaacgtggcgaggga
gtgccccggccagccttggcggaaccccaggccacccccattgaactgtcggtagatacc
ttcctgggtgataactatatcccggaggctaccttaaaaatggaactctaccaccgcctg
atgaatgccggggatctagctgccgtagaggatatcgccgcggaaatggaggaccgttac
ggaccgccgccgccggaagccaggaaccttctggccctgaccagggtccgcatcctggcc
cgtgaggtaggggtaataagcgtcaaccagaaaaaccgggaagtagaattgagctttggc
cagcataccggcctgcggggagaaaaactcctgcagctcaaccagtatttcccccggaag
ctggctttctcttcagccggcggccttaccatcagggtacgggtcatgggtctgagccag
gaagaattactggacctgctggagaaagtcctgaccaggatcaagtacctggtaaccgaa
gcagcaagttag
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