Neomoorella thermoacetica DSM 2955: MOTHA_c02860
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Entry
MOTHA_c02860 CDS
T06429
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mthz
Neomoorella thermoacetica DSM 2955
Pathway
mthz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mthz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MOTHA_c02860 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mthz03019
]
MOTHA_c02860 (rnr)
03016 Transfer RNA biogenesis [BR:
mthz03016
]
MOTHA_c02860 (rnr)
Enzymes [BR:
mthz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MOTHA_c02860 (rnr)
Messenger RNA biogenesis [BR:
mthz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MOTHA_c02860 (rnr)
Transfer RNA biogenesis [BR:
mthz03016
]
Prokaryotic type
tRNA degradation factors
MOTHA_c02860 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
MarR_2
PF0610-like_N
DUF7347
BSD
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AKX95656
LinkDB
All DBs
Position
280727..283039
Genome browser
AA seq
770 aa
AA seq
DB search
MDREEILTLMRARSYRPLTASELMVALGIEDEGAFMELLHSLEQEGYIVRTRKDKYGLPE
KMGLVSGRLQASPRGYAFVVPLDKDREDLYIGALNINGAMHGDLVLARVLPGTTGRRQEG
EIIRVLQRVNKRVVGTFDATRNLDFVIPDDARLHQDIIIPAGASLEARDRDKVVVEITRW
PEARRSPEGRVIQVLGQTGAPGVDVLSIIKKYGLETEFPPEVIREAEEIPRDLEPGELAK
RRDLRDWRLVTIDGADARDLDDAVSLERRPDGSYLLGVHIADVSFYVREGRPLDREAFNR
GTSVYFVDRVIPMLPARLSNDICSLNAGEDRLAITALMTISPAGTVKDYELFPSVIRVRE
RMTYDDVRRILEDKDPELMERYRELVPDFQLMARLAAILRRRRRRRGAIDFDFPEAKVKL
DDQGLPVAIIPRHRTVAEGIIEEFMIVANEVVARHLYELAVPAVYRVHEEPAPDKLEALN
TFLAYFGLHIKPNREGRVRPRAFQEILAAVKGRPEERVISTVMLRSMMHARYAGDCLGHF
GLASPYYCHFTSPIRRYPDLVVHRILRETWSPAGFSAERMAQLSAFVALAAVQASEREKL
AEEAERESLDMKKVQYMERHVGATFAGVISGVVPYGFFVELENTVEGLVHVSTLTDDYYH
YQEDQLALVGEHTGKSYRIGQPVTVLVTRVSVDARQVDFELVKPEEEKTGPVGGAGAKVK
GHPVKAREREAGPSGGKARKKAMTMAGGKTGSKGKGKARVRRNKGTRRRK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcgaagaaatactcaccctcatgcgggcccggtcctaccggcccctgacggcg
tcagaattgatggtcgctttggggatagaggacgaaggggctttcatggaactcctgcac
tccctggagcaggagggttatatcgtccggacccgtaaggataaatacggcctgccagaa
aagatgggtctcgtcagcggccgcctccaggcctcgcccaggggctacgcctttgtagtt
cccctggataaggatcgggaggatttatatataggcgccctcaacatcaatggagccatg
catggcgacctggttctggcccgggttctcccagggactaccggccgtcgccaggaaggg
gagattatccgcgtcctgcagcgggtcaacaagcgcgtggttggaacctttgacgctacc
cgcaatctggattttgtcattcccgacgatgcccggctgcatcaggatatcatcattccc
gccggggcttccctggaggccagggatagggataaagtagtggttgaaatcacccgctgg
cccgaggcgcggcgcagccccgaggggcgggtgatccaggtcctgggacaaacaggcgcg
cccggggtggatgttttaagcattattaagaaatatggcctggagacggaattccccccg
gaagtgatccgggaagcggaagagataccgagggatctcgaacccggggaattggccaag
cgtcgcgacctccgggattggcgcctggttaccatcgacggcgccgacgcccgcgatctg
gacgacgccgtttccctggaacgccggcccgacggtagctacctgctgggggtacatatt
gccgatgtgagtttctacgtccgggagggcaggcccctggaccgagaggccttcaaccgg
ggcaccagtgtctactttgtcgaccgggtcattcccatgctgcccgccaggttatccaat
gatatctgttccctgaacgccggtgaggaccgcctggccataacggccctgatgaccatt
tcgccggcgggtacggtcaaggactatgagctttttccctcagttatccgggtccgggag
cgaatgacctacgatgacgtcaggcgtatcctggaggacaaggaccctgaactaatggaa
cgttaccgggaactggtgccggacttccagctcatggcccggctggccgccattttacgc
cgccggcgccgccggcggggagccattgacttcgatttcccggaggccaaagtaaagctg
gatgatcaggggttaccggtagccattatcccgcgacaccggactgtagccgaagggatc
atcgaggaatttatgatcgtcgccaatgaagtggtggcccgccacctttacgaactggcg
gtgccggccgtttaccgagtgcatgaggaaccggctccggataagctggaggccttgaac
acattcctggcctatttcggcctgcacatcaaacccaaccgtgaaggccgggtacggccc
cgggccttccaggagatcctggccgccgtcaagggaaggccggaagaacgggtaatcagt
actgtcatgctgcgttccatgatgcatgcccgctatgccggcgattgcctggggcatttc
ggcctggcctcaccctactactgccactttacctcgcccatccgccgctacccggacctg
gttgtccaccgcattctgcgggagacctggtcccccgctggtttttcggcggagcggatg
gcccagctcagcgccttcgtagccctggctgccgtccaggcttcggaaagggaaaagctg
gccgaggaggctgagcgggaatccctggacatgaaaaaggtccagtatatggagcgccat
gttggggcgacctttgccggtgttatcagcggcgtggtgccttatggtttctttgtggag
ctggagaataccgtcgaggggctggtccatgtttcgaccctcacggatgactattaccat
tatcaggaagaccagttggccctggtgggagagcataccggcaagtcctatcgcatcggc
cagccggttaccgtactggtgaccagggtaagcgtcgacgcccgccaggtggactttgag
ctggtgaagcctgaggaggagaaaaccggtccggtcgggggggccggagcgaaggtaaag
gggcacccggtcaaagcccgggaaagggaagccgggccaagcgggggtaaagcccggaaa
aaggcgatgaccatggccggcggcaaaaccgggtcgaaggggaagggtaaagccagggtc
aggcggaataaaggtacccggcgacgtaaataa
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