Massilia oculi: DIR46_01870
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Entry
DIR46_01870 CDS
T05448
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mtim
Massilia oculi
Pathway
mtim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DIR46_01870 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtim03400
]
DIR46_01870 (mfd)
Enzymes [BR:
mtim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DIR46_01870 (mfd)
DNA repair and recombination proteins [BR:
mtim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DIR46_01870 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
SNF2-rel_dom
CTE_SPB4
ERCC3_RAD25_C
MshEN
Motif
Other DBs
NCBI-ProteinID:
AWL03323
UniProt:
A0A2S2DD63
LinkDB
All DBs
Position
431008..434454
Genome browser
AA seq
1148 aa
AA seq
DB search
MPFDLKKHLPKPGQRFVLPLAHGSSDAYALATAALALKANGQMLTVVVANASDGQRLLDE
IPWFADGKLSCHLLPDWETLPYDAFSPHQDLVSERLATLHEIRNGQCDVLVVPATTALVR
LAPPSFLAAYTFFFRQGERLDEAKLKAQLTLAGYTHVSQVMSPGEYSVRGGLIDLFPMGS
VLPYRLDLFGDDIESIRTFDADTQRSLYPVKEVRLLPGREFPMDDAARTAFRGRWRERFE
GDPTRSPIYRDIGNGIASAGIEYYLPLFFDETANLFDYLPLEAPVALVGDIDAAIQRFWL
DTESRYRFLKSDRERPILEPHELFLGAEQFFTCIKPHGRWNIARDPAAPASELSAPIPDI
AVNRRLDDPLTNLRAYLQRSDTRVMICADSAGRRETLQQYFGEYKLDLAPVEGFEGFRQS
DARLALGVAPLQAGFELLDAESGHLVFITETELYAGSGRRAGKKKQEATSQVESMVRDLS
ELKIGDPVVHINHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGA
SPEDAPLHSLGSGQWEKAKRKAAEQVRDTAAELLNLYARRAARQGHSFEYLNIDYENFAQ
SFGFDETPDQAEAIHNVIKDMTSGRPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAIL
APTTLLAEQHAQTFADRFADWPVKIAELSRFRTGKEINNAIKGMADGTLDIVIGTHKLLS
PDVKFTRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSI
IATAPQKRLAIKTFVRSEDGSIIREACLRELKRGGQIYFLHNEVDTIENRRAMLQELLPE
ARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVNDLSNLTKQSQRRLDAIQQMEELGSGFYLAMHDLEIRGA
GEVLGENQSGEMLEVGFQLYSDMLNEAVRALKAGKEPDLAAPLSSTTEINLHVPALLPAD
YCGDVHERLSIYKRLANCESQDCIDSMQEELIDRFGKMPDAVKALVETQRLRIAARRVGI
VKIDAHGEAASLQFMEKPPIDPIRIITLIQKNRQVKLAGQDKLRITASMPDLAARVNQIK
QTIKQLLA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcgacctcaagaaacacctccccaaaccaggccagcgtttcgtgctgccgctg
gcgcacggctcgtccgacgcctatgccctcgccaccgccgcgctggccctgaaggccaac
ggccagatgctcaccgtcgtcgtcgccaacgcgagcgacggccagcgcctgctcgacgag
atcccctggtttgcggacggcaagctgtcctgccacctgctgcctgactgggaaacgctg
ccctacgacgcgttctcgccgcaccaggatctggtgtcggaacgcctggcaaccctgcac
gagatccgcaacggccaatgcgacgtgctggtggtgccggccaccacggcgctcgtgcgc
ctggccccgccatcgttcctggccgcctacaccttcttcttccgccagggcgagcgcctg
gacgaagcaaagctcaaggcccagctgacgctggccggctatacccacgtctcgcaggtg
atgtcgccgggcgagtactcggtgcgcggcggcctgatcgacctgttcccgatgggctcc
gtgctgccctaccgtctcgacctgttcggcgacgacatcgaatcgatccgcactttcgac
gccgacacccagcgctcgctctatccggtcaaggaagtgcgcctgttgccgggccgcgag
ttcccgatggacgacgcggcccgcaccgcctttcgcggccgctggcgcgagcgtttcgag
ggcgatccgacccgctcgccgatctaccgcgacatcggcaacggcatcgcctcggccggc
atcgaatactacctgccgctgttcttcgacgagacggccaacctgttcgactacctgccg
cttgaagcgccggtagccctcgtgggcgacatcgatgcggcgatccagcgcttctggctc
gacaccgagtcgcgctaccgcttcctcaagagcgaccgagaacggccgatcctggaaccg
catgagctgttcctcggcgccgagcagttcttcacctgcatcaagccgcacggccgctgg
aatatcgcgcgcgatcctgctgcgccggcctcggagctgtcggcgccgatccccgacatc
gccgtcaaccgccggctggacgacccgctgaccaatctgcgcgcctacctgcagcgcagc
gatacgcgcgtgatgatctgcgccgattcggccggccgccgcgagaccctgcagcagtac
ttcggcgaatacaagctggacctggcgccggtggaaggcttcgagggcttccgccagagc
gacgcccgcctggcgctgggcgtggccccgctacaggccggtttcgaactgctcgatgcc
gaatccggccacctggtgttcatcaccgagaccgagctgtatgcgggttcgggccggcgc
gccggcaagaagaagcaggaagcgacgagccaggtcgagtcgatggtgcgcgacctgtcg
gagctcaagatcggcgatccggtggtccacatcaaccacggcatcggccgctacatgggc
ctgaccagcatggacctgggcgaaggcgagaccgagttcctgcacctggaatacgccaag
gacaccaagctgtatgtgccggtgtcgcagctgcacgtgatctctcgctattccggcgcc
tcgcccgaggacgcgccgctgcactcgctcggctcgggccagtgggaaaaagccaagcgc
aaggccgccgagcaggtgcgcgacaccgccgccgagctcctgaacctgtacgcgcggcgc
gccgcgcgccagggccattcgttcgaatatttgaacatcgactacgagaacttcgcccag
agcttcggcttcgacgagacgccggaccaggccgaagccatccataacgtgatcaaggac
atgacctcgggccggccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagacc
gaggtcgcgctgcgcgccgccttcatcgccgtcatgggcggcaagcaggtcgcgatcctg
gccccgaccaccctgctggccgagcagcacgcccagaccttcgccgaccgcttcgccgac
tggccggtcaagatcgccgagctgtcgcgcttccgcaccggcaaggagatcaacaatgcg
atcaagggcatggccgacggcacgctcgacatcgtgatcggcacccacaagctgctgtct
cccgacgtcaagttcacgcgcctcggactggtgatcatcgacgaagaacaccgcttcggc
gtgcgccagaaagaggccctgaaggccctgcgcgccgaggtcgacgtgctgaccctgacc
gcgaccccgatcccgcgcacgctgggcatggcgctggaaggcttgcgcgatttctcgatc
atcgccaccgccccgcagaagcgcctggcgatcaagacgtttgtccgcagcgaagacggc
tcgatcatccgcgaggcctgcctgcgcgaactgaaacgcggcggccagatctacttcctg
cacaatgaagtggacaccatcgagaaccgccgcgcgatgctgcaggagttgttgcccgag
gcgcgcatcggcgtggcccacggccagatgcacgagcgcgacctcgagaaggtgatgcgc
gacttcgtggcccagcgcttcaacatcctgctgtgcacgaccatcatcgagaccggcatc
gacgtcccgaccgcgaacacgatcatcatgcaccgcgccgacaagttcggcctggcccag
ctgcaccagctgcgcggccgcgtcggccgttcgcaccaccaggcctatgcctacctcctg
gtgaacgacctgtcgaacctgaccaagcagtcgcagcgccgcctggacgcaatccagcag
atggaagaactgggcagcggcttctatctcgccatgcacgacctggaaatccgcggcgcc
ggcgaggtgctgggcgagaaccagtccggcgagatgctcgaagtgggcttccagctgtat
tccgacatgctcaacgaggcggtgcgcgcgctcaaggccggcaaggagcccgacctggcg
gcgccgctgtcgtcgaccaccgagatcaacctgcacgtgccggccctgctgcccgccgac
tactgcggcgacgtgcacgagcgcctgtcgatctacaagcgcctggccaactgcgagagc
caggactgcatcgattcgatgcaggaggagctgatcgaccgcttcggcaagatgccggat
gcggtcaaagcgctggtcgagacgcaacgcctgcgcatcgcggccaggcgcgtgggcatc
gtcaagatcgacgcccatggcgaggcggccagcctgcagttcatggaaaagccgccgatc
gacccgatcaggatcatcacgctgatccagaagaaccgccaggtcaagctggccggccag
gacaagctgcgcatcacggccagcatgcccgacctggcggcgcgcgtgaaccagatcaaa
cagaccatcaaacaactgctcgcctga
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