Massilia oculi: DIR46_03540
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Entry
DIR46_03540 CDS
T05448
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mtim
Massilia oculi
Pathway
mtim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DIR46_03540
09124 Replication and repair
03420 Nucleotide excision repair
DIR46_03540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtim03021
]
DIR46_03540
03036 Chromosome and associated proteins [BR:
mtim03036
]
DIR46_03540
03400 DNA repair and recombination proteins [BR:
mtim03400
]
DIR46_03540
Enzymes [BR:
mtim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
DIR46_03540
Transcription machinery [BR:
mtim03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DIR46_03540
Chromosome and associated proteins [BR:
mtim03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
DIR46_03540
DNA repair and recombination proteins [BR:
mtim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DIR46_03540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Helicase_C
DUF5959
Arb1
Motif
Other DBs
NCBI-ProteinID:
AWL03602
UniProt:
A0A2S2DE48
LinkDB
All DBs
Position
765043..767304
Genome browser
AA seq
753 aa
AA seq
DB search
MSYTIAVRALCEFTAKQGDLDLRFTPSPSAQEGIAGHAVVAGRRGDGYRSEVALSGQWND
LHVRGRADGYDANENLIEEVKTHRGRVDAIPDNHRHLHWAQLRVYGHLMCQEQGMDSVNL
ALVYYDIVSGVETVLRETRDSAWLRAHFEELCERFSGWAASEAAHRAARDAALTSLPFPH
ADFRPGQRQLAESIYRANTGGRCLLAQAPTGIGKTVGSLFPVLKAMPREKLDKVFFLAAK
TPGRRLALDGAATLCRASQAPLRVLELTARDKACEHPDKECHGESCPLARGFYDRLPAAR
AAAADVPVLDREALREVALAHEVCPYYLGSEMARWSDMIVGDYNYYFDGSAMLYALALNN
GWKTSLLVDEAHNLVGRARSMYSTELDRALLRLARAGAPPTVKKALERVGRAWTAVDKTA
PAPYQLLEKIPSKLVDALQEMGSAINEHLAAFPGPLDPDLQRFYFDAMGFVRLAESFGPH
SLCDLSRDADRPTLRDSTICIRNVVPAPFLGPRFSATHSSTLFSATLGPWHYCLDTLGMP
ENTAWVEVDSPFRASQLEVHVARGISTRYQVRAASVQPIAELIARQYHERPGNYLAFFSS
FDYLDKVANALERLDPTITAWRQERRMSEHERQCFIDRFAVGGTGVGFAVLGGAFGEGVD
LPGERLIGAFVATLGLPQVNPVNEQLRERMQELFGAGYDYTYLYPGIQKVVQAAGRVIRT
EQDRGVVWLIDDRFAQPGIRTLMPAWWELDSRQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
gtgagctacaccatcgccgtacgcgccctgtgcgagttcaccgccaagcagggtgacctc
gacctgcgcttcaccccctctcccagcgcccaggaaggcattgccggccacgccgtcgtc
gccggccgccgcggcgacggctaccgcagcgaggtcgcgctgtccggccagtggaacgac
ctgcacgtgcgcggccgcgccgatggctacgacgccaatgaaaacctgatcgaagaggtc
aagacccatcgcggccgggtggacgccatccccgacaaccaccgccacctgcactgggcc
cagctgcgcgtgtatggccacctgatgtgccaggaacagggcatggattcggtcaacctg
gccctggtctactacgacatcgtcagcggcgtcgaaaccgtgctgcgcgaaacgcgcgac
agcgcctggctgcgcgcccacttcgaggaactgtgcgaacgcttctcgggttgggccgcc
agcgaagcggcgcaccgcgcggcgcgcgacgccgcactgacgtcgctgccgttcccgcac
gccgacttccgtcccggccagcgccagctggccgaaagcatctaccgcgccaatacgggc
gggcgctgcctgctggcgcaagccccgaccggcatcggcaagaccgtgggcagcctgttc
ccggtactgaaagccatgccgcgcgagaagctggacaaggtgttcttcctggccgcgaag
acgcccggccggcgcctggcgctggacggcgccgcgaccctgtgccgcgccagccaggcc
ccgctgcgggtgctcgaactcacggcgcgcgacaaggcctgcgagcatcccgacaaggag
tgccatggcgaatcctgcccgctggcgcgcggcttctacgaccgcctgccggccgcgcgc
gcggccgcggccgacgtgcccgtgctggaccgcgaggcgctgcgcgaggtcgccctggcg
cacgaggtctgcccctattacctgggcagcgagatggcgcgctggtccgacatgatcgtc
ggcgactacaactattatttcgacggcagcgccatgctgtacgcgctggcgctgaacaac
ggctggaagaccagcctgctggtcgacgaggcccacaacctggttggccgggcgcgctcg
atgtacagcaccgaactcgatcgcgcgctgctgcgcctggcccgcgccggcgcgccgccg
accgtcaagaaggcgctcgagcgcgtgggccgggcctggaccgcggtcgacaagacggcg
cccgcgccctaccagctcctcgagaagatcccatcgaagctggtggatgcattgcaggaa
atgggcagcgccatcaacgaacacctggcggcctttcccggcccgctcgaccccgacctg
cagcgcttctatttcgacgccatgggcttcgtgcgcctggccgaatcgttcggcccgcac
tcgctgtgcgacctgagccgggacgccgaccgccccaccctgcgcgactcgacgatctgc
atccgcaacgtggtgccggcgcccttcctcggcccgcgcttttccgccacccattcgagc
accctgttctcggccacgctcgggccctggcattattgcctcgacacgctcggcatgccg
gaaaacacggcctgggtcgaggtcgactcgccgttcagggcgagccagctcgaggtccac
gtcgcgcgcggcatctcgacccgctaccaggtgcgcgccgcctcggtccagccgatcgcc
gaactgatcgcgcgccagtaccatgagcggcccggcaactacctggccttcttcagcagc
ttcgactatctcgacaaggtggccaatgcgctggagcggctggacccgaccatcacggcc
tggcgccaggagcgccgcatgagcgagcacgaacgccagtgcttcatcgaccgattcgcc
gttggcggcacgggggtcggtttcgcggtgctgggcggcgccttcggcgaaggcgtcgac
ctgccgggcgagcgcctgatcggcgctttcgtcgccacgctcggcctgccccaggtcaat
cccgtcaacgagcagttgcgcgagcggatgcaggaactgttcggcgccggctacgactac
acctacctgtaccccggcatccagaaggtggtgcaggcggccggccgcgtgatccgcacc
gagcaggatcgcggcgtcgtgtggctgatcgacgaccgcttcgcccagccgggcatcagg
accttgatgccggcatggtgggaactcgattcacgccaatag
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