Massilia oculi: DIR46_04545
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Entry
DIR46_04545 CDS
T05448
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mtim
Massilia oculi
Pathway
mtim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DIR46_04545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtim03019
]
DIR46_04545
Enzymes [BR:
mtim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DIR46_04545
Messenger RNA biogenesis [BR:
mtim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DIR46_04545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DegT_DnrJ_EryC1
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWL03778
UniProt:
A0A2S2DEK8
LinkDB
All DBs
Position
972796..974157
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AA seq
453 aa
AA seq
DB search
MSFSSLGLSDAIVRAVTEQGYTAPTPIQSQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
HRLSSDAVGAAQRNKTAPRAIRALVLTPTRELAAQVEESVRLYGKYTNLNSAVIFGGVGI
NPQIKLLKHGVDILVATPGRLLDHAGQGTVDLSKIEILILDEADRMLDMGFIHDIRKVLA
LLPPKRQNLLFSATFSDDIKALADRLLDNPQSIEVARRNSTVEVIAQKIHPVDRDKKHPM
LAHLIKSNNWHQVLVFTRTKHGANKLVEQLGKDGIGAMAIHGNKSQSARTKALSEFKDGS
LQVLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEHQ
MLKDIEKLIKQTLPRAVIPGFEPDLNAKPQPIQLRSGAPGHGNRGGRPGGGRGHGGGGGG
GGGGKPRTPGTGAPAAAKRHSGPRPASAVRRDR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcattctcttctcttggtctctctgacgcgatcgtgcgcgcggtgaccgaacaaggt
tataccgccccgacgccgatccagagccaggccatcccggccgtcctgaatggcggcgac
ctgctggccggcgcccagaccggcaccggcaagaccgccggcttcaccctgccgatcctg
caccgcctgtcgagcgacgcggtgggcgccgcccagcgcaacaagaccgcgccgcgcgcc
atccgcgcgctggtgctgaccccgacccgcgagctcgcggcccaggtcgaggaaagcgtg
cgcctgtacggcaagtacacgaacctgaattcggccgtgatcttcggcggcgtcggcatc
aacccgcagatcaagctgctcaagcacggcgtcgacatcctggtcgccaccccgggccgc
ctgctggaccacgcgggccagggcaccgtggacctgtcgaaaatcgagatcctgatcctg
gacgaagccgaccgcatgctggacatgggcttcatccacgacatccgcaaggtgctggcc
ctgctgccgccaaagcgccagaacctgctgttctcggccaccttctcggacgacatcaag
gcgctggccgaccgcctgctggacaatccgcagtcgatcgaggtcgcgcgccgcaactcg
accgtggaagtgatcgcgcaaaaaatccacccggtggaccgcgacaagaagcacccgatg
ctggcgcacctgatcaagtcgaacaactggcaccaggtgctggtattcacgcgcaccaag
catggcgccaacaaactggtggaacaactgggcaaggacggcatcggcgcgatggcgatc
cacggcaacaagagccagtcggcacgcaccaaggcgctgtcggaattcaaggatggcagc
ctgcaagtgctggtggccaccgacatcgcggcgcgcggcatcgacatcgaccagctgccg
cacgtggtgaactacgacctgccgaatgtgccggaagactatgtccaccgtatcggccgt
accggccgtgcgggcgcgacgggcgaggcggtgtcgctggtctgcgtggacgagcaccag
atgctgaaggacatcgaaaagctgatcaagcaaacgctgccgcgcgcagtgatccccggc
ttcgagcccgacctgaacgccaagccgcaaccgatccagctgcggagcggcgcgccaggc
cacgggaaccgcggtggccgtccaggcggcggccgtggccacggcggtggtggcggtggt
ggcggtggcggcaaaccacgcacccccggcaccggcgcccccgccgccgcaaagcgccac
agcggcccccgccccgcctccgccgtccgccgcgaccgctaa
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