Massilia oculi: DIR46_16040
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Entry
DIR46_16040 CDS
T05448
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
mtim
Massilia oculi
Pathway
mtim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DIR46_16040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtim03019
]
DIR46_16040
Enzymes [BR:
mtim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
DIR46_16040
Messenger RNA biogenesis [BR:
mtim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DIR46_16040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF2204
CsoSCA_cat
Motif
Other DBs
NCBI-ProteinID:
AWL05784
UniProt:
A0A2S2DKB7
LinkDB
All DBs
Position
complement(3510796..3512193)
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AA seq
465 aa
AA seq
DB search
MIKKFIRKILGVKDQRDATEPTILGPAEHGIDPKNVSSNAIRVTQTLQEAGFKAFVVGGA
VRDLLLGVKPKDFDIATDATPEQVKKLFRRAFIIGRRFQIVHVMFGQDLLEVTTFRGNGS
DNAPKDEHGRVLRDNSFGPQHEDAARRDFTINAMYYDPATQSVLDYHGGIEDIRAKTLRI
IGMPEARYREDPVRMLRVVRFAAKLGFTIEPTTRAPIPVMAPLIDNVPAARVFDEMLKLL
LSGHALACLKELRSAGLHHGLLPLLDVVLEQPIGMKFVTLALDSTDARVKAGKGVSPGFL
FASLLWHQVLEKWTAYRAAGEAPIPALHLAADAVLETQTENLALQRRIATDMRDIWAMQP
RFERRAGRAPYKLLEHPRFRAGYDFLLLRCASGELPAEVGEWWTEFYAAEGGDRERLVAA
AGTREREGGAANGAPKKRRPRRGPRKNTGEGGGERSPAPAGGSEE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaaattcatccgtaaaatcctgggtgtgaaagaccagcgcgacgccaccgaa
ccgaccatcctcggcccggccgaacacggcatcgatcccaagaatgtctcgtcgaacgcg
atccgcgtcacgcaaaccctgcaggaagccggcttcaaggccttcgtcgtcggcggcgcc
gtgcgcgacctgctgctgggcgtgaagcccaaggacttcgacatcgccaccgacgccacg
cccgagcaggtcaagaaactgttccggcgcgccttcatcatcggccgccggttccagatc
gtgcacgtgatgttcggccaggacctgctggaggtgaccaccttccgcggcaacggcagc
gacaacgcgcccaaggacgaacatggccgcgtcctgcgcgacaacagcttcggtccgcag
cacgaagacgcggcgcgacgcgacttcacgatcaatgcgatgtactacgatccggccacc
cagtcggtgctggactaccacggcggcatcgaggacatccgcgccaagaccttgcgcatc
atcggcatgcccgaggcgcgctaccgcgaagacccggtgcgcatgctgcgcgtggtgcgt
ttcgcggccaagctgggcttcacgatcgagccgaccacacgcgcgccgatccccgtcatg
gccccgctgatcgacaatgtgccggcggcgcgcgtgttcgacgagatgctcaagctgctg
ctgtcgggccacgccctggcctgcctcaaggagctgcgctcggccggcctgcaccatggc
ctgctgccgctgctggacgtcgtgctcgagcagccgatcggcatgaagttcgtgaccctg
gcgctcgattcgaccgatgcgcgcgtcaaggccggcaagggcgtctcgcccgggttcctg
ttcgcgtcgctgctgtggcaccaggtgctggaaaaatggaccgcctaccgcgccgcgggc
gaagcgccgattcccgcgctgcacctggcggccgacgccgtgctcgaaacgcagaccgag
aacctggccctgcagcgccgcatcgccaccgacatgcgcgacatctgggccatgcagccg
cgtttcgagcgccgcgccggccgcgcgccgtacaagctgctggaacacccgcgcttccgc
gccggctatgacttcctgctgctgcgctgcgcctcgggagaattgccggccgaagtgggc
gaatggtggaccgagttctatgcggccgaaggcggcgaccgcgagcgcctggtggctgcg
gccggcacgcgcgagcgcgaaggcggcgcggccaatggcgcgcccaagaagcgtcgtccc
cgccgcggtccgcgcaagaatactggtgaaggcggcggcgaacgcagcccggcgccagca
ggcggcagcgaagaatga
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