Massilia oculi: DIR46_18425
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Entry
DIR46_18425 CDS
T05448
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mtim
Massilia oculi
Pathway
mtim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DIR46_18425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtim03019
]
DIR46_18425
03009 Ribosome biogenesis [BR:
mtim03009
]
DIR46_18425
Enzymes [BR:
mtim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DIR46_18425
Messenger RNA biogenesis [BR:
mtim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DIR46_18425
Ribosome biogenesis [BR:
mtim03009
]
Prokaryotic type
rRNA helicases
DIR46_18425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
adh_short
Motif
Other DBs
NCBI-ProteinID:
AWL06212
UniProt:
A0A2S2DLG3
LinkDB
All DBs
Position
4075020..4076849
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AA seq
609 aa
AA seq
DB search
MSDTPIPSFSDLNLSAPVLKALKDVGYETPSPIQAATIPLLLEGRDVLGQAQTGTGKTAA
FALPILSNIDVKKTAPQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLPIYGGQSYGPQL
SSLRRGVHVVVGTPGRVIDHIEKGSLDLSQLTTLVLDEADEMLRMGFIDDVEQILQQTPE
GRQTTLFSATMPPAIKRIAKTYLRDPAEVTVAAKTGTADNIKQRYWLVAGMHKLDALTRI
LEAEPFDGMIIFARTKLGTEELATKLQARGFAATAINGDMAQQQRERTIEQLKNGKIDIL
VATDVAARGLDVERISHVINYDVPSDPESYTHRIGRTGRAGRSGDAILFITPRERGLLKA
IERATRQPVAPLELPTIKVVNEVRITRFKDQIRTALAEGGLEVFRSLIEDIERDDNVPAI
DIAAALAKLARGDEPLLLQKPDREARPEFVPSQREFGGGAQERAPRAPRGDWEERPARPA
REPGFKKERVMRDPEPGMATFRIEVGFAHGAKPGNIVGAIANEANIPSKHIGRIEIYDDY
STLDLPDDMPKDLVEHLKTIWVAGRQLAITRDGDTPATPPAKKPYAAKGVERRLGEKPAG
KKPHRKGQA
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaccccaatcccatcgttttccgacctcaatctttcggcgcctgtcctgaaa
gcattgaaagacgtcggctacgaaacgccgtcgccgatccaggctgccaccattcctttg
ctgctggaagggcgcgacgtgttggggcaggcccagaccgggaccggcaagaccgcggcc
ttcgcgctgccgatcctgtcgaatatcgacgtcaagaaaacggcgccgcaagcgctggtg
ctggcgccgacgcgtgaactggcgatccaggtcgccgaagccttccagagctatgccgcc
catatcaagggcttccacgtgctgcccatctacggcggccagagctatggcccacaactg
tcgagcctgcgccgcggcgtgcacgtggtggtcggcaccccgggccgcgtcatcgaccac
atcgagaagggctcgctcgacctgtcgcagctgaccaccctggtgctggacgaagccgac
gaaatgctgcgcatgggcttcatcgacgatgtcgagcagatcctgcagcaaaccccggaa
ggccgccagaccacgctgttctcggccaccatgccgccggcgatcaagcgcatcgccaag
acctatctgcgcgatccggccgaagtgaccgtggccgccaagaccggcaccgccgacaat
atcaagcagcgctactggctggtggccgggatgcacaagctcgacgcgctgacccgtatc
ctcgaagccgagccgttcgacggcatgatcatcttcgcgcgcaccaagctgggcaccgaa
gagctggcgaccaaactgcaggcgcgcggcttcgcggccaccgccatcaatggcgacatg
gcccagcaacagcgcgagcgcaccatcgagcagctcaagaacggcaagatcgacatcctg
gtggcgaccgacgtcgccgcgcgcggcctcgacgtcgagcgcatcagccacgtgatcaac
tacgacgtgccgtccgatcccgagagctacacccaccgcatcggccgcaccggccgggca
gggcgcagcggcgacgcgatcctgttcatcaccccgcgcgagcgtggcctgcttaaggcc
atcgagcgcgccacccgccagccggtcgcgccgctcgaactgccgaccatcaaggtggtc
aacgaagtgcgcattacccgcttcaaggaccagatccgcacggccctggccgaaggcggc
ctggaagtgttccgttcgctgatcgaagacatcgagcgcgacgacaacgtgccggcgatc
gatatcgccgccgcgctggccaagctggcgcgcggcgacgagccgctgctcctgcaaaag
cccgatcgcgaagcgcgtcccgagttcgtgccgtcgcagcgcgagttcggtggcggcgcc
caggagcgcgcgccgcgcgcaccgcgtggcgactgggaagagcgtccagcccgtccggcg
cgcgaaccgggcttcaagaaagagcgcgtgatgcgcgatcccgaaccgggcatggcgacc
ttccgcatcgaagtcggctttgcccatggcgccaagccgggcaatatcgtcggcgcgatc
gccaacgaagccaacatcccgtccaagcatatcggccgcatcgagatctatgacgactac
agtaccctcgacctgccggacgacatgccgaaggacctggtcgagcacctgaagacgatc
tgggtcgcgggccgccagctggccattacgcgtgacggcgacaccccggccacgccgccg
gccaagaagccgtatgccgccaagggcgtcgagcgtcgcctcggcgaaaagccggccggc
aagaagccgcaccgcaagggtcaggcataa
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