Massilia oculi: DIR46_19100
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Entry
DIR46_19100 CDS
T05448
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mtim
Massilia oculi
Pathway
mtim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DIR46_19100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtim03019
]
DIR46_19100
03009 Ribosome biogenesis [BR:
mtim03009
]
DIR46_19100
Enzymes [BR:
mtim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DIR46_19100
Messenger RNA biogenesis [BR:
mtim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DIR46_19100
Ribosome biogenesis [BR:
mtim03009
]
Prokaryotic type
rRNA processing factors
DIR46_19100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWL06329
UniProt:
A0A2S2DMM2
LinkDB
All DBs
Position
complement(4228097..4231273)
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFREGVDVRNCTIKEALKEGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRNVEELQ
WDLNYLMQLWRAIEGAGKSAAGAFLIYQESSLVIRAIRDYFQPDIGEVLIDTDEIYEQAQ
QFMSHVMPDMAHRVKRYSDDVPLFSRFQIEHQIETAYARTVPLPSGGAIVIDHTEALVSI
DVNSARATRGSDIETTAFNTNCEAADEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEVLKIENRHRITVILIPNKHLDTPH
YKLERIKHDDPRLEDAHASYAMAESADTDMAYAKRQKEEAKPRQEAVVKTITPAQPAPVV
DRSEAAKPAKAAAAPAAAPVHAAPPAEKSFFGRLRDFFFGKPEEPAPAPVVAEKPAAPAP
AERGERNNRNKGGRNGGRNGERGAKPGREREERDAVAKGTPGEELAKSPQGDEAREGRQP
RQPRERKPREPREPRELAEGAARAEGAERPDRAERGERKERQPRQPRERTERTERTTQAI
EAKLDEVSVSQLVATEIVSVSTTGPDGSQEVVQQVVKSVTTIGPDGEEIEGEGDEPRRRR
RRGGRNRNRRDRDQVEGSEALEGSDEAPAFTPVADEEAAKVAAAARAAKAKPARAATQDA
WPFPTAASVAAAKAQADKAAAPAPAPATPAAPAPVAAAPVAAEQIPFPTAASVAAQQNMF
PTAASVAAARAEAEQEAAPVPAPAPASVEQAPVAQAAPVPAPVVDTASVAAPVAASAVET
APAAAPAITVAPTPAAAPAASAPAPGAALAAAPAAPVEAPAKLDDVLAQAGLQLAATDPE
KLRAAQEAAVAIPVRLGRARKPVVAPVDEPLVQVDTRQ
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgtttaacgctacgcagcaagaggagctgcgcgtagcgattgtcgac
ggtcaaaaactgatcgacatcgatatcgagaccgccggtcgcgagcaacgcaagtcaaac
atctacaagggtgtcatcacccgcatcgaaccctccctcgaagcctgcttcgtttcctac
ggcgaagaccgccacggattcctccccttcaaagaagtcgcccgctcgtatttccgcgag
ggcgtcgacgtgcgcaactgcaccatcaaggaagcgctgaaagagggccaggaaatcatg
gtccaggtcgagaaggaagaacgcggtaacaagggcgccgccctgacctcgttcatctcg
ctggccggccgctacctggtcctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcgtcgaaggcgaagagcgccaggaactgcgcgagacgatggacaagctcgacctgccg
caaggcatgtcggtgatcgcccgcaccgccggcatcggccgcaacgtcgaagagctgcag
tgggacctgaactacctgatgcagctgtggcgcgcgatcgaaggcgccggcaagtcggcc
gccggcgctttcctgatctatcaggaatcgtcgctggtcatccgcgccatccgcgattac
ttccagcccgatatcggcgaagtcctgatcgacaccgacgagatctacgaacaggcccag
cagttcatgagccacgtgatgcccgacatggcgcatcgtgtaaaacgttatagcgacgac
gtgccgctgttctcgcgtttccagatcgaacaccagatcgagaccgcctacgcgcgcacc
gtgccgctgccatcgggcggcgcgatcgtgatcgaccacaccgaagccctggtctccatc
gacgtcaactcggcgcgcgccacccgcggctcggacatcgagaccaccgccttcaacacc
aactgcgaagcggccgacgaagtcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtggccaagaaccagcgcgaagtcgagcagcgc
ctcaaggacgcgctgcaccacgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccttcgctgtcggaaggctcgcacgtg
acctgcccgcgctgctcgggcaccggccacatccgtgataccgaatcgtcggccctgcaa
gtcctgcgtatcatccaggaagaggccatgaaagagaattcggccgcgattcacgtgcag
gtgccggtcgacgtcgcggcgttcctgctgaacgaaaagcgcggcgaagtgctcaagatc
gagaaccgccaccgcatcaccgtgatcctgatcccgaacaagcatctggacaccccgcac
tacaagctcgagcgcatcaagcacgacgatccacgcctggaagacgcgcacgccagctat
gcgatggccgagagcgccgacaccgacatggcctacgccaagcgccagaaagaagaagcc
aagccgcgccaggaagccgtggtcaagaccatcaccccggcccagccggccccggtggtc
gaccgcagcgaagcggccaagccggcgaaagccgccgccgcgccggccgccgcccctgtc
catgccgcccctcctgccgaaaaaagcttcttcggccgcctgcgcgacttcttcttcggc
aagccggaagaaccggctccggcgccagtcgtggccgagaagccggccgcgcctgcgccg
gccgagcggggcgagcgcaacaaccgcaacaagggtggccgcaatggcggccgcaatggc
gaacgcggcgccaagccgggccgtgaacgcgaagagcgcgacgcggttgccaagggcacg
ccaggtgaagagctggccaagtcgccacagggcgacgaggcccgcgaaggccgccagccg
cgccagccgcgcgagcgcaagccacgcgagccgcgtgagccgcgcgaactggccgaaggc
gcagcgcgcgccgagggcgccgagcgtcccgatcgtgcggaacgcggcgagcgcaaggag
cgccagccacgccagccgcgcgagcgtaccgagcgtaccgaacgcactacccaggccatc
gaagccaagctcgacgaagtgagcgtaagccagctcgtcgccaccgaaatcgtctcggtg
agcaccaccggcccggacggcagccaggaagtcgtgcagcaggtcgtgaagtcggtgacg
acgatcggcccggatggcgaagaaatcgagggcgaaggcgacgagccacgccgccgccgc
cgccgtggtggccgcaaccgcaatcgccgcgaccgtgaccaggtcgagggcagcgaagcg
ctggaaggttcggacgaagcgccggcattcaccccggtagccgatgaagaggccgccaag
gtcgccgctgccgccagggccgcgaaggccaagccggcgcgcgccgccacgcaagatgca
tggccgttcccgaccgccgcatcggtggccgctgcgaaggcccaggccgacaaggctgcc
gcacctgcacctgcacctgccacgcctgccgctcctgccccggtcgcagcggcgcccgtg
gctgccgaacagatcccgttcccgactgcggcttcggttgctgctcagcagaacatgttc
ccgaccgcggcatcggtggctgcggcacgcgccgaggccgaacaggaagctgcgccggtc
cccgcacctgctccggcctcggtcgagcaggcgccggtggcgcaggctgctccggtgcct
gccccggtcgtcgacaccgcgtcagtggccgcaccggtcgccgcctcggcggtcgagacg
gctccggcagccgcaccggccatcaccgtcgcgccgacgccagccgccgcgcccgccgct
agcgcaccggcgcctggcgccgcgctggctgctgctccggcagcgccagtcgaggcaccg
gccaagctggacgacgtgctggcccaggccggcctgcaactggcggcgaccgaccctgaa
aaactgcgcgccgcccaggaagctgccgtggcgatcccggttcgcctgggccgcgcccgc
aagccggtggtcgcgccggtcgacgagccgctggtgcaggtcgatacgcgtcagtaa
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