Massilia oculi: DIR46_19800
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Entry
DIR46_19800 CDS
T05448
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mtim
Massilia oculi
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtim03019
]
DIR46_19800 (hrpA)
Enzymes [BR:
mtim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DIR46_19800 (hrpA)
Messenger RNA biogenesis [BR:
mtim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DIR46_19800 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
NACHT
AAA_30
T2SSE
SLFN-g3_helicase
SRP54
ResIII
TsaE
Motif
Other DBs
NCBI-ProteinID:
AWL06456
UniProt:
A0A2S2DNN6
LinkDB
All DBs
Position
4380326..4384399
Genome browser
AA seq
1357 aa
AA seq
DB search
MSEQSNKPSPQQAREASATANATSVERRPRRTPGERGESRPRPERPPREEAPVVRNPLPP
ITFPEDLPVSGRRAEIAKAILENQVVIVSGETGSGKTTQLPKICLELGRGGKGLIGHTQP
RRIAASSTAKRIAQELGSPLGEHVGFKVRFNDTLQKGASVKLMTDGILLAETQTDPLLRN
YDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAERFARHFAANDKPAPV
IEVSGRLYQVEVRYRPIDRDPVPGAAAVDPTKPLPKAQAAREKRDLMDGVVDAVDELCRI
GSGDVLVFLPGEREIRDCAEALRKHHPPHVDILPLFARLSVEEQDRVFRPSGNARRIVLA
TNVAETSLTVPGIRYVVDTGLARVKRYSFRNKVEQLQVEPIAQSAANQRAGRCGRVADGV
CIRLFEEDDFLKRPRFTEPEILRSSLAAVILRMKSLRLADVETFPFIEAPQGRAIADGYQ
LLQEVGAVDDNNELTPLGRKLAKLPLDPRVGRMILAALDNHCLTEMLIVASALSTQDPRD
RPIEYQQQADEKHKKFADEKSEFLSYLKIWAWFEDAIAHKKTNRQLQDNCRANFLSQLRL
REWRDVHSQLLTIVREQGWRLNESPATYEQLHLALLTGLLGNIGFKSEDEQGGVYLGARG
IKFHIWPGSTLGKKAGRWVMAAELVETTRLYARTIAQIQPEWVEKIGGHLLKKSWGEPRW
EKKQAQVTALERATLYGLVIYGGRRINYGQRAPSEAREIFIRDALVAGDYETRLPFYIHN
HKLVKDIENLEHKSRRQDVLVDDQLIAAFYDKEIPLDVVNGAGFEKWYKDEARDNPKLLY
LNREELMRHEAAGVTTELFPKAMVVTGIEMGLTYHFEPGSVRDGVTLSVPLFALNQIPQE
RPAWLVPGMIKEKVHLLLKSLPQKLRRHCVPLPEYAARFVDRIHAASAFGRGDLVDVLIM
DVRAQTGVAVKTADFKLETLPAHMFMNFKVIDEHGRQLEMGRNLATLQAELGGQARQSFQ
KMAEATPSAANARAQAARPVAAAPSVPAPSAGKGKGNAPQTAPATAPAQQSASGRQHTGL
TSWTFGELPELLEINQGKLTLIGFPALVDKGTHCDLEVFDDPNVAARTHRVGLRRLFALQ
FKEQLKFAEKNIPGLQGMGMQFMNIGSQEDLRDQIVAKAIDIACLQDPLPVDAASFNQRR
DQGKGRIGLLINEVARLAGQILGEYHGLPKRVQALPSAVSSDIMAQLQALVHKRFILENE
YSQLAHFPRYLKAINVRLEKLRGNPSRDAQLMAEWHTAASQFQRTLKNMAGKNNDPRMVE
FRWMLEELRVSLFAQELRTPMPVSAKRLQKVWESMLR
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacagagtaacaagccttcgccacagcaggcgcgcgaagcgagcgccaccgcc
aatgccacctcggtcgaacgccgtccccgtcgtacgccgggcgagcgcggcgagtcgcgt
ccacgcccggagcgcccgccgcgtgaagaagctcccgtggtgcgcaatcctctgccgccg
attaccttccccgaagacctgccggtctcgggccggcgcgccgagatcgcgaaagccatt
ctcgagaaccaggtggtcatcgtctcgggcgagaccggttcgggcaagaccacccagctg
ccgaagatctgcctggaactgggccgcggcggcaaggggctgatcggccacacccagccg
cgccggatcgcggcgtcgtcgaccgccaagcgcatcgcgcaggaactcggctcgccgctg
ggcgagcacgtcggcttcaaggtgcgcttcaacgacaccttgcaaaaaggcgcctcggtc
aagctgatgaccgacggtatcctgctggcggaaacgcaaaccgatccgctgctgcgcaac
tacgacacgatcatcatcgacgaggcgcacgagcgcagcctgaacatcgacttcctgctc
ggctacctgaagcagctgctgccgcgccgtccggatctgaaagtgatcatcacctcggcg
acgatcgacgccgagcgcttcgcgcgccacttcgccgccaacgacaagccggcgccggtg
atcgaggtctcgggccgcctgtaccaagtcgaggtgcgctatcgtccgatcgaccgcgac
ccggtcccgggcgccgctgccgtcgacccgaccaagccgctgccgaaagcccaggccgcg
cgcgagaagcgcgacctgatggatggcgtggtcgacgccgtcgatgagctgtgccggatc
ggctcgggcgacgtgctggtgttcctgccgggcgaacgcgagatccgcgactgcgccgag
gcgctgcgcaagcaccatccgccgcacgtcgacatcctgccgctgttcgcccgcctgtcg
gtggaagagcaggaccgcgtgttccgtccgagcggcaacgcgcgccgcatcgtcctggcc
accaacgtggccgagacctcgctgaccgtgccgggcatccgctacgtggtcgacacgggc
ctggcgcgcgtcaagcgctacagcttcaggaacaaggtcgagcagttgcaggtcgagccg
atcgcgcaatcggcggccaaccagcgcgccggccgttgcggccgcgtggccgacggcgtc
tgcatccgcctgttcgaggaagacgatttcctcaagcgccccaggttcaccgaaccggag
atcctgcgttcgtcgctggcggccgtcatcctgcgcatgaaatccctgcgcctggccgac
gtcgagaccttccccttcatcgaggcgccgcagggccgcgcgatcgccgacggctaccag
ctgctgcaggaagtcggcgcggtcgacgacaacaacgagctgaccccgctgggccgcaag
ctggccaagctgccgctcgatccgcgcgtgggccgcatgatcctggccgccctggacaac
cactgcctgaccgagatgctgatcgtggcctcggccctgtcgacgcaagacccgcgcgac
cggccgatcgaataccagcagcaggccgacgagaagcacaagaagttcgcggacgagaag
tccgaattcctgagctacctgaagatctgggcctggttcgaggacgcgatcgcgcacaag
aagaccaaccgccagttgcaggacaactgccgcgccaacttcctgtctcagctgcgcctg
cgcgagtggcgcgacgtgcattcgcagctgctcaccatcgtgcgcgagcagggctggcgc
ctgaacgaatcgccggccacctatgaacagctgcacctggcgctgctcacaggtttgctc
ggcaatatcggtttcaagtccgaggacgagcagggcggcgtctaccttggcgcgcgcggc
atcaagttccatatctggcccggctcgacgctcggcaagaaggcgggacgctgggtcatg
gcggccgagctggtcgagaccacgcgcctgtacgcgcgcaccatcgcccagatccagccc
gagtgggtcgagaagatcggcggccacctgctgaagaaatcctggggcgagccgcgctgg
gaaaagaagcaggcgcaagtcacggcgctcgagcgcgcgaccctgtacggcctcgtcatc
tatggcggccggcgcatcaactacggccagcgcgcgccaagcgaagcgcgcgagatcttc
atccgtgacgcgctggtggccggcgactacgagacgcgcctgccgttctacatccacaac
cacaagctggtgaaggacatcgagaacctcgagcacaagtcgcgccgccaggacgtgctg
gtcgacgaccagctgatcgcggccttctacgacaaggagatcccgctcgacgtcgtgaac
ggcgccggtttcgagaagtggtacaaggacgaggcgcgcgacaatccgaagctgctctac
ctgaaccgcgaagaactgatgcggcacgaggcggccggcgtcaccaccgagctgttcccg
aaggcgatggtcgtcaccggcatcgagatgggcctgacgtatcacttcgagccgggcagc
gtgcgcgatggcgtgaccttgtcggtgccgctgttcgcgctgaaccagattccgcaagag
cgtcccgcctggctggtgccgggcatgatcaaggaaaaggtgcatctgctgctgaaatcg
ctgccgcagaagctgcgccgccactgcgtgccgctgccggaatacgcggcgcgtttcgtg
gaccgcatccatgcggcgagcgccttcgggcgcggcgacctggtcgacgtgctgatcatg
gatgtgcgcgcgcagacgggcgtggcggtgaagaccgccgacttcaagctcgagacgctg
ccggcgcacatgttcatgaacttcaaggtcatcgacgagcatggccgccagctggagatg
gggcgcaacctggcgacgctccaggccgaactgggtggccaggcgcgccagagcttccag
aagatggccgaagcgacgccaagcgccgccaatgcgcgtgcgcaggcggcgcggccggtg
gcggcggcgccgagcgtgcccgctccatcggccggcaaagggaagggcaacgcgccgcag
accgcgccggctaccgcccctgcgcagcaatcggcatcgggacgccagcacacgggtctc
accagctggaccttcggcgagctgcccgaactgctggagatcaaccagggcaagctgacg
ctgatcggcttcccggcgctggtcgacaagggcacgcattgcgacctggaggtcttcgac
gatccgaacgtggccgcgcgcacccaccgcgtgggcctgcgccgcctgttcgcgctgcag
ttcaaggagcagctcaagttcgccgagaagaacattcccggcctgcagggcatgggcatg
cagttcatgaacatcggctcgcaggaagacttgcgcgaccagatcgtggccaaggcgatc
gacatcgcctgcctgcaggatccgctgccggtcgacgcggcttcgttcaaccaacgccgt
gaccagggcaagggccgcattggcctgctcatcaacgaggtggcgcgcctggcggggcag
atcctgggcgagtatcacggcctgcccaagcgcgtgcaggccctgccttcggcggtgtcg
tcggacatcatggcgcagctgcaggcgctggtgcacaagcgcttcatccttgagaacgag
tacagccagctggcgcacttcccgcgctacctgaaggcgatcaacgtccgcctcgagaag
ttgcgcggcaatccgtcgcgcgatgcgcagctgatggccgagtggcacacggcagcgagc
cagttccagcgcacgctcaagaacatggcgggcaagaacaacgatccgcgcatggtcgag
ttcaggtggatgctggaagagctgcgggtgtcgctgttcgcgcaggagctgaggacgccg
atgccggtgtcggccaagcgcttgcagaaggtatgggagtcgatgttgcgctga
DBGET
integrated database retrieval system
