Massilia oculi: DIR46_20330
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Entry
DIR46_20330 CDS
T05448
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mtim
Massilia oculi
Pathway
mtim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DIR46_20330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtim03019
]
DIR46_20330
03400 DNA repair and recombination proteins [BR:
mtim03400
]
DIR46_20330
Enzymes [BR:
mtim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DIR46_20330
Messenger RNA biogenesis [BR:
mtim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DIR46_20330
DNA repair and recombination proteins [BR:
mtim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DIR46_20330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
DEAD_2
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AWL06550
UniProt:
A0A2S2DME9
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All DBs
Position
4509875..4511587
Genome browser
AA seq
570 aa
AA seq
DB search
MTRHDPTLMHRGLLAVRRNTIRRLLSAVFGIAQLREGQQRVIDSVLDGKDTLAIMPTGGG
KSLCYQIPAKMLEGITVVVSPLISLMKDQLEKLEEIGIRSVQVNSSLSSDEEHAALEAIA
TESCEIVFCTPERLVSPEFIAVLRQVTLDIVVIDEAHCISQWGHDFRPAYIGLAAAIEAI
GRPPVLALTATATDEVIADIGKQLGRKLNVINTGIYRPNLHYRVRQVTSPREKYREALRL
VQETQGVGIVYAATVKVAEEMLAVLEEAGESVTLYHGKLSAAERKMNQDLFMEGERRVMV
ATNAFGMGIDKSDTRFVIHLQIPANLESYYQESGRAGRDGLDAECTLLFLQDDKRLQQFF
LMKHYPDAEELQLVHASVRSLGGEGPVALKRLDAALEDVADSNIKVCLKLLKDAKLLRQN
RKLEYIPSATEPRPGVFARLAQVYVQKQEHDKEALNQMVGYAVSGFCRWKLLLDYFGDRA
PGFEHCCKCDNCLNPPALSLSEDIVIRDDEFDREPLEEATKPKFEAGARARSARYGEGVV
VAIAGDQVTVDFPDGERRSFMADFLDQVAT
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacccgacacgaccccaccctcatgcaccgcggcctgctcgccgtgcgccgtaatacc
atccgacgcctcctgagcgccgtgttcggcatcgcgcagctgcgcgaaggccagcagcgc
gtgatcgacagcgtactcgacggcaaggacaccctggccatcatgcccaccggcggcgga
aagtcgctgtgctaccagatcccggccaagatgctggaggggatcacggtcgtcgtttct
ccgctcatctcgctcatgaaggaccagctcgagaagctggaagagatcggcatccgatcg
gtccaggtcaacagcagcctgtcgtccgacgaagaacacgccgcgctcgaggcgatcgcc
accgagtcctgcgaaatcgtgttctgcaccccggaacgcctggtctcgcccgaattcatc
gccgtgctgcgccaggtcacgctcgacatcgtcgtgatcgacgaggcgcactgcatctcg
caatggggacacgacttccgcccggcctatatcggcctggccgccgcgatcgaagcgatc
ggccgcccgccggtgctggcgctcacggccaccgccaccgacgaggtaatcgccgacatc
ggcaagcagctgggccgcaagctgaatgtgatcaataccggcatctaccggcccaacctg
cattaccgcgtgcggcaggtcaccagccccagggagaaataccgggaggcgttgcgcctg
gtgcaggaaacacaaggcgtcggcatcgtgtacgccgccaccgtcaaggtggccgaggag
atgctggccgtgcttgaggaggccggcgagtcggtcacgctctatcacggcaagctgtcg
gcggccgagcgaaaaatgaaccaggacctgttcatggaaggcgagcgccgcgtgatggtg
gcgaccaatgccttcggcatgggcatcgacaagagcgatacacgcttcgtgatccacctg
cagatcccggccaatctcgaatcctattaccaggaatcgggtcgcgccggacgtgatgga
ctcgatgccgaatgcaccttgctgttcctgcaggacgacaagcgcctgcagcagttcttc
ctgatgaagcattatccggatgccgaggaactgcaactggtgcacgccagcgtgcgcagc
ctgggcggcgaggggccggtggcgctcaagcgcctcgatgcggcgctggaagacgtcgcc
gattcgaatatcaaggtctgcctcaagttgctcaaggacgccaagctgctgcgccagaac
cgcaagctggagtacatccccagtgcaaccgagccgcggcccggcgtattcgcgcgcctg
gcccaggtgtacgtgcagaagcaggaacacgacaaggaagccctgaaccagatggtcggc
tacgccgtcagcggcttttgccgctggaagctgctgctcgattacttcggcgaccgggcg
cctggatttgaacactgctgcaagtgcgacaactgcctgaatcctccggcgctgagcctg
tccgaagacatcgtgatccgcgacgacgaattcgaccgcgagccgctggaggaagcgaca
aagccgaagttcgaggcaggcgcgcgcgccaggtcggccaggtatggcgaaggggtggtg
gtcgccatcgccggcgatcaggtgacggtcgacttcccggatggagaacgccgcagcttc
atggccgatttcctcgatcaggtagccacgtaa
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