Massilia oculi: DIR46_23825
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Entry
DIR46_23825 CDS
T05448
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mtim
Massilia oculi
Pathway
mtim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mtim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DIR46_23825 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtim03400
]
DIR46_23825 (recD)
Enzymes [BR:
mtim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DIR46_23825 (recD)
DNA repair and recombination proteins [BR:
mtim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DIR46_23825 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
SH3_13
AAA_11
NAT10_TcmA_helicase
AAA_22
PhoH
UvrD-helicase
DEAD
SLFN-g3_helicase
AAA_16
AAA_25
AAA_28
TraI_hel_assoc_N
nSTAND3
ResIII
AAA_5
Motif
Other DBs
NCBI-ProteinID:
AWL07156
UniProt:
A0A2S2DQR3
LinkDB
All DBs
Position
5305002..5306942
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AA seq
646 aa
AA seq
DB search
MGKTEPDRRIEPDAAALWHEIGNLTEAGELRRLSSAFARFIAQLGEAPPPLVLAAAILSE
LEGHGHSCVQLSDLATGAASLLGWSEEQWAQLATAAAPLPKGVAGWRKLLASCGQVWVRE
EFDYDQPLVLDGERLYLRRYWRDETQVARAVRERAEATHPVESSLVRAWLDKLFVAAPGA
AQPDWQKLACAVALRGSVAIITGGPGTGKTYTVARLLALLFATAPDADRQRVALAAPTGK
AAARLKQSIDKALGELADRVGAELPLRKLTERMGAARTLHSLLGARPDTRAFAHHRGNPL
DVDVLIVDEASMVHLEMMASLLDALPPGATLILLGDKDQLSSVEAGAVLGDLCHDAQAGN
YDKDTIGYVKAASGEAIPEEYAGEGGPLAQQTVMLRHSRRFGGPIGQLALAVNAGDMARA
GEVLRSSLDGVRWIEHAQPSQLLQLAYAGYAPYLELLKGGAAGDQDWVRQVLQAFETFRI
LCAVRDGEWGVAGLNEAIEKRLEAGGLLRRSAEWYVGRPVMVTRNDYSTGVYNGDIGVTL
ADPTRPGAQRVYFLEGDQVRSVLATRLRNVETAFAMTVHKSQGSEFRHTVLALPRESNAI
LTRELVYTGITRASREFTLVTPSGDVLRQAIASRTHRTSGLRELVA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagactgaacccgatcgcaggattgaacccgatgctgcggccctgtggcatgaa
atcggcaacctgaccgaggcgggcgagctgcgccgcctgtcgagcgccttcgcgcgcttc
atcgcgcagctgggggaggcgccgccaccgctggtgctggccgcggccatcctgtccgag
ctcgaaggccacggccacagctgcgtccagctgtccgacctggcgacgggcgccgcgtcc
ctgctgggctggagcgaggagcaatgggcgcagctggcaacggccgcggcgccgctgccc
aagggcgtggcgggctggcgcaagctgctggccagctgcgggcaggtgtgggtgcgcgag
gagttcgactacgatcagccgctggtgctggacggcgagcgcctctacctgcgccgctac
tggcgcgacgagacccaggtcgcgcgcgccgtgcgcgaacgcgccgaggcgacccacccg
gtggagtcaagcctggtgcgcgcctggctcgacaagctgttcgtggcggcgccgggcgcc
gcgcagcccgactggcaaaagctggcctgcgccgtggccctgcgcggttcggtcgcgatc
atcacgggcgggcccggcaccggcaagacctatacggtggcgcgtctgctggccttgctg
ttcgcgaccgcgccggatgccgaccgccagcgcgtggccctggccgcgccgaccggcaag
gcggccgcgcgcctgaagcaatcgatcgacaaggcgctgggggagctggccgaccgcgtc
ggcgccgagctgccgctgcgcaagctgaccgagcgcatgggcgccgcgcgcaccctgcac
agcctgctcggggcgcggcccgacacccgcgcctttgcccaccaccgcggcaatccgctc
gacgtcgacgtattgatcgtcgacgaagcctcgatggtgcacctcgagatgatggccagc
ctgctcgacgcgctgccgccaggggccacgctgatcctgctgggcgacaaggaccagctg
tcctcggtggaggcgggcgccgtgctgggcgacctgtgccacgatgcgcaggccggcaac
tacgataaggacaccatcggctatgtgaaggcggccagcggcgaggcgattcccgaggag
tacgccggcgagggcgggccgctggcccagcagaccgtcatgctgcgccacagccgccgc
ttcggcggtccgatcggccagctggcgctggcggtcaatgccggagacatggcgcgcgcc
ggggaggtcttgcgatccagcctcgatggcgtgcgctggatcgagcatgcgcagccatcc
cagctgctgcagctggcctacgccggctacgccccttatctcgaactgctcaagggtggc
gcggcgggcgaccaggactgggtgcgccaggtgctgcaggccttcgagaccttccgcatc
ctgtgcgcggtgcgcgatggcgagtggggcgtggcgggcctgaacgaggcgatcgagaag
cgcctggaagcgggcggcctgctgcgccgcagcgcagaatggtatgtgggcaggccggtg
atggtaacccgcaacgactattcgacgggcgtgtacaacggcgacatcggcgtgaccctg
gccgacccgacgcgcccgggcgcgcagcgggtctacttcctggagggggaccaggtgcgc
agcgtgctggccacgcgcctgcgcaatgtggagacggcgttcgcgatgacggtgcataaa
tcgcagggctcggaattccgccatacggtgctggcgctgccgcgcgagagcaatgccatc
ctgacgcgcgagctggtctacaccggcatcacgcgcgccagccgcgaattcacgctggtg
accccgagcggcgacgtgctgcgccaggcgatcgccagccgcacccaccgcaccagcggc
ttgcgcgagctggtggcgtag
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