Mycobacterium tuberculosis CCDC5180: CCDC5180_0611
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Entry
CCDC5180_0611 CDS
T01992
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mtl
Mycobacterium tuberculosis CCDC5180
Pathway
mtl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCDC5180_0611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtl03021
]
CCDC5180_0611
03400 DNA repair and recombination proteins [BR:
mtl03400
]
CCDC5180_0611
Enzymes [BR:
mtl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCDC5180_0611
Transcription machinery [BR:
mtl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCDC5180_0611
DNA repair and recombination proteins [BR:
mtl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCDC5180_0611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEJ49448
LinkDB
All DBs
Position
759628..763578
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ
PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD
AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE
LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV
KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccgcatcggtcttgctaccgcggaggacatc
aggcaatggtcctatggcgaggtcaaaaagccggagacgatcaactaccgcacgcttaag
ccggagaaggacggcctgttctgcgagaagatcttcgggccgactcgcgactgggaatgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgtcgtgagcggatgggccacatcgagcttgccgcgccc
gtcacccacatctggtacttcaagggtgtgccctcgcggctggggtatctgctggacctg
gccccgaaggacctggagaagatcatctacttcgctgcctacgtgatcacctcggtcgac
gaggagatgcgccacaatgagctctccacgctcgaggccgaaatggcggtggagcgcaag
gccgtcgaagaccagcgcgacggcgaactagaggcccgggcgcaaaagctggaggccgac
ctggccgagctggaggccgagggcgccaaggccgatgcgcggcgcaaggttcgcgacggc
ggcgagcgcgagatgcgccagatccgtgaccgcgcgcagcgtgagctggaccggttggag
gacatctggagcactttcaccaagctggcgcccaagcagctgatcgtcgacgaaaacctc
taccgcgaactcgtcgaccgctacggcgagtacttcaccggtgccatgggcgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaagccgagtcgctgcgggatgtc
atccgaaacggcaaggggcagaagaagcttcgcgccctcaagcggctgaaggtggttgcg
gcgttccaacagtcgggcaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggcggccggttcgccacgtccgacttg
aacgacctgtaccgcagggtgatcaaccgcaacaaccggctgaaaaggctgatcgatctg
ggtgcgccggaaatcatcgtcaacaacgagaagcggatgctgcaggaatccgtggacgcg
ctgttcgacaatggccgccgcggccggcccgtcaccgggccgggcaaccgtccgctcaag
tcgctttccgatctgctcaagggcaagcagggccggttccggcagaacctgctcggcaag
cgtgtcgactactcgggccggtcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtggacctcaaccatgcgcagaacatcaagagcgccaagcgcatggtggagcgccagcgc
ccccaagtgtgggatgtgctcgaagaggtcatcgccgagcacccggtgttgctgaaccgc
gcacccaccctgcaccggttgggtatccaggccttcgagccaatgctggtggaaggcaag
gccattcagctgcacccgttggtgtgtgaggcgttcaatgccgacttcgacggtgaccag
atggccgtgcacctgcctttgagcgccgaagcgcaggccgaggctcgcattttgatgttg
tcctccaacaacatcctgtcgccggcatctgggcgtccgttggccatgccgcggctggac
atggtgaccgggctgtactacctgaccaccgaggtccccggggacaccggcgaataccag
ccggccagcggggatcacccggagactggtgtctactcttcgccggccgaagcgatcatg
gcggccgaccgcggtgtcttgagcgtgcgggccaagatcaaggtgcggctgacccagctg
cggccgccggtcgagatcgaggccgagctattcggccacagcggctggcagccgggcgat
gcgtggatggccgagaccacgctgggccgggtgatgttcaacgagctgctgccgctgggt
tatccgttcgtcaacaagcagatgcacaagaaggtgcaggccgccatcatcaacgacctg
gccgagcgttacccgatgatcgtggtcgcccagaccgtcgacaagctcaaggacgccggc
ttctactgggccacccgcagcggcgtgacggtgtcgatggccgacgtgctggtgccgccg
cgcaagaaggagatcctcgaccactacgaggagcgcgcggacaaggtcgaaaagcagttc
cagcgtggcgctttgaaccacgacgagcgcaacgaggcgctggtggagatttggaaggaa
gccaccgacgaggtcggtcaggcgttgcgggagcactaccccgacgacaacccgatcatc
accatcgtcgactccggcgccaccggcaacttcacccagactcgaacgctggccggtatg
aagggcctggtgaccaacccgaagggtgagttcatcccgcgtccggtcaagtcctccttc
cgtgagggcctgaccgtgctggagtacttcatcaacacccacggcgctcgaaagggcttg
gcggacaccgcgttgcgcaccgccgactccggctacctgacccgacgtctggtggacgtg
tcccaggacgtgatcgtgcgcgagcacgactgccagaccgagcgcggcatcgtcgtcgag
ctggccgagcgtgcacccgacggcacgctgatccgcgacccgtacatcgaaacctcggcc
tacgcgcggaccctgggcaccgacgcggtcgacgaggccggcaacgtcatcgtcgagcgt
ggtcaagacctgggcgatccggagattgacgctctgttggctgctggtattacccaggtc
aaggtgcgttcggtgctgacgtgtgccaccagcaccggcgtgtgcgcgacctgctacggg
cgttccatggccaccggcaagctggtcgacatcggtgaagccgtcggcatcgtggccgcc
cagtccatcggcgaacccggcacccagctgaccatgcgcaccttccaccagggtggcgtc
ggtgaggacatcaccggtggtctgccccgggtgcaggagctgttcgaggcccgggtaccg
cgtggcaaggcgccgatcgccgacgtcaccggccgggttcggctcgaggacggcgagcgg
ttctacaagatcaccatcgttcctgacgacggcggtgaggaagtggtctacgacaagatc
tccaagcggcagcggctgcgggtgttcaagcacgaagacggttccgaacgggtgctctcc
gatggcgaccacgtcgaggtggggcagcagctgatggaaggctcggccgacccgcatgag
gtgctgcgggtgcagggcccccgcgaggtgcagatacacctggttcgcgaggtccaggag
gtctaccgcgcccaaggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgggtgaccatcatcgactcgggctcgacggagtttttgcctggctcgctg
atcgaccgcgcggagttcgaggcagagaaccgccgagtggtggccgagggcggtgagccc
gcggccggccgtccggtgctgatgggcatcacgaaggcgtcgctggccaccgactcgtgg
ctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaactgc
cgcagcgataagctcaacggtctgaaggaaaacgtgatcatcggcaagctgatcccggcc
ggtaccggtatcaaccgctaccgcaacatcgcggtgcagcccaccgaggaggcccgcgct
gcggcgtacaccatcccgtcgtatgaggatcagtactacagcccggacttcggtgcggcc
accggtgctgccgtcccgctggacgactacggctacagcgactaccgctag
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