Mycobacterium tuberculosis CCDC5180: CCDC5180_2227
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Entry
CCDC5180_2227 CDS
T01992
Name
(GenBank) ribonuclease E rne
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mtl
Mycobacterium tuberculosis CCDC5180
Pathway
mtl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCDC5180_2227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtl03019
]
CCDC5180_2227
03009 Ribosome biogenesis [BR:
mtl03009
]
CCDC5180_2227
Enzymes [BR:
mtl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CCDC5180_2227
Messenger RNA biogenesis [BR:
mtl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCDC5180_2227
Ribosome biogenesis [BR:
mtl03009
]
Prokaryotic type
rRNA processing factors
CCDC5180_2227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
PCB_OB
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AEJ51064
LinkDB
All DBs
Position
complement(2731687..2734434)
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AA seq
915 aa
AA seq
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MLDALTALDGRVRSAHSTVDRVDAVRVRDLLATHLETAGVLAASVHAPEASEEPESRLML
ETQETRNADVERPHYMPLFVAPQPIPEPLADDEDVDDGPDYVADDSDADDEGQLDRPANR
RRRRGRRGRGRGRGEQGGSDGDPVDQQSEPRAQQFTSADAAETDDGDDRDSEDTEAGDNG
EDENGSLEAGNRRRRRRRRRKSASGDDNDAALEGPLPDDPPNTVVHERVPRAGDKAGNSQ
DGGSGSTEIKGIDGSTRLEAKRQRRRDGRDAGRRRPPVLSEAEFLARREAVERVMVVRDR
VRTEPPLPGTRYTQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIG
RGRNGVLYAGEVNWDAAGLGGADRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAG
RFLVYVPGASSTGISRKLPDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVAR
LRERWEQIEAKAQETKEKAAGAAVALYEEPDVLVKVIRDLFNEDFVGLIVSGDEAWNTIN
EYVNSVAPELVSKLTKYESADGPDGQSAPDVFTVHRIDEQLAKAMDRKVWLPSGGTLVID
RTEAMTVIDVNTGKFTGAGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLE
SNRDLVLRRLTESLARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTSCPNCSGRGIL
LHADPVDSAAATGRKSEPGARRGKRSKKSRSEESSDRSMVAKVPVHAPGEHPMFKAMAAG
LSSLAGRGDEESGEPAAELAEQAGDQPPTDLDDTAQADFEDTEDTDEDEDELDADEDLED
LDDEDLDEDLDVEDSDSDDEDSDEDAADADVDEEDAAGLDGSPGEVDVPGVTELAPTRPR
RRVAGRPAGPPIRLD
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
gtgctggatgcgctcaccgcgctcgacggacgggtccgcagcgcacattccacggtggat
cgcgtcgatgcggtccgggtgcgcgatctgctggccactcatctcgagactgccggcgtg
ctggcggcctcggtccatgcgcccgaagcgtccgaggaacccgagtcccggctgatgcta
gagacccaggagactcggaatgccgacgtggagcggccgcactatatgccgctgttcgtc
gcgccccagccgattcccgagccgttagcggacgacgaggacgtcgacgatggccccgac
tacgtcgccgacgattccgacgctgacgacgaagggcagctagaccggccggcgaaccgg
cggcgacgtcgcggccgtcggggtcgcggtcgcggacgcggggagcagggtggatccgac
ggtgatccggttgaccagcaatccgagccccgggcccaacaatttaccagcgcggacgcc
gccgaaaccgacgacggcgacgatcgagattccgaagataccgaagccggtgacaacggc
gaggacgaaaacggttcgctggaggccggcaatcgtcgccggcgccgccggcgacggcgt
aagtcggcttctggtgacgacaacgacgctgcgttagagggcccgttgcctgacgatccg
cccaacactgtcgtacacgaacgcgtgccccgcgcgggtgacaaggccggcaactcgcag
gatggcggctctggctccactgagatcaagggcatcgacggctcgacccgcctggaagcc
aagcggcaacgccgccgcgacgggcgcgacgccggccggcgccgcccaccggtgttgagt
gaggccgagtttctggctcgccgtgaggcggtcgagcgggtgatggtggtgcgcgaccgg
gtccgcaccgagccaccgctgccgggcacgcggtacacccagattgcggtgctcgaagac
ggtatcgtcgtggagcatttcgtgacgtctgcggcctcggcttccctggtgggcaacatc
tacctgggaattgtgcagaacgtgctgccgtcgatggaggcggcgttcgtcgacatcggg
cgcggtcgcaatggagtgctctacgccggtgaagtcaattgggatgcagcggggttgggc
ggggccgatcgcaagatcgagcaggccctcaaacccggcgactatgtcgtggtgcaggtc
agcaaggacccggtagggcataagggcgcgcggctgaccacgcaggtgtcgctggccggt
cgatttctggtttatgtgccgggcgcgtcgtcgaccgggatcagccgcaagctgcccgac
actgaacgtcagcggctcaaggagatcctgcgcgaggtggtgccgtctgacgctggggtc
atcatccgtaccgcgtctgagggcgtcaaagaggacgacattcgcgcagacgtcgctcgg
ctacgggaacgctgggagcagatcgaggccaaggcacaagagaccaaggagaaggccgcg
ggcgctgcggtggcgctgtacgaagaaccggacgtgctggtcaaggttatccgtgacctg
ttcaacgaggacttcgtcggcctcatcgtttccggcgacgaggcttggaacacgatcaat
gaatacgtgaattctgttgctcccgaattggtttcgaagttgaccaagtacgagtccgct
gacgggccggatggccagtccgcgccggacgtcttcacggtgcaccgcattgacgagcag
ctggccaaagcgatggaccgcaaggtgtggttgccgtcgggcgggacgctggtgatcgac
cggaccgaagccatgacggtcattgacgtcaacaccggtaaattcaccggagccgggggc
aacctcgagcagacggtcaccaagaacaatctggaagcggccgaggagatcgtgcgccag
ctgcggctgcgcgatatcggcggcatcgtggtcatcgacttcatcgacatggtgctggag
tccaaccgcgacttggtgttgcgccggttgaccgagtcgctggcccgcgatcgcacccgc
caccaggtgtccgaggtgacgtcgctggggctggtgcagttgactcgcaagcggttggga
accggactgatcgaagcgttctccacatcgtgtccgaactgcagtggccgcgggatcctg
ctgcacgccgacccggtcgattcggccgcggcgactgggcgaaagtctgagcccggtgct
cggcggggcaagcgatcgaaaaagagccggtccgaagagtccagtgataggagcatggtc
gccaaggtccccgtgcacgctcccggtgagcatcccatgttcaaggcgatggcagcgggc
ttgtcctcgctggctggtcgcggtgacgaggaatccggggagcccgctgccgaactcgcc
gagcaggccggcgatcaaccgcccactgacctcgacgacaccgcccaagcggacttcgag
gacaccgaggacaccgacgaagacgaggacgagctcgacgccgacgaggacctcgaggac
ctcgacgacgaggacctcgacgaggatctcgacgttgaagactccgattccgacgacgaa
gactccgacgaagacgccgccgatgccgacgtcgacgaggaggatgcagccggcttggac
ggttccccgggcgaagtcgacgtccccggtgtcacggagctggcccctacccgtccacgt
cggcgcgttgcgggccggccggccggcccaccaatccgcctagactga
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