KEGG   Thermothelomyces thermophilus: MYCTH_16224
Entry
MYCTH_16224       CDS       T02231                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
mtm  Thermothelomyces thermophilus
Pathway
mtm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mtm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    MYCTH_16224
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mtm03021]
    MYCTH_16224
   03019 Messenger RNA biogenesis [BR:mtm03019]
    MYCTH_16224
Transcription machinery [BR:mtm03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     MYCTH_16224
Messenger RNA biogenesis [BR:mtm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     MYCTH_16224
SSDB
Motif
Pfam: zf_CCCH_4 zf-CCCH Torus zf-CCCH_4 zf-CCCH_2 zf-CCCH_9 Atrophin-1
Other DBs
NCBI-GeneID: 11508431
NCBI-ProteinID: XP_003658559
JGI: 16224
UniProt: G2Q1C2
LinkDB
Position
1:complement(<1090919..>1091677)
AA seq 253 aa
AAQLLNHTAPSYTFTFTPFLQRTYQHSLPPDRPVCKAYLSGSCPLKSHCPERHTTPAGHP
ASQRDGGGGGGGGGGGFGSLVCKHWLRGLCKKGEACEFLHEYNLRKMPECNFFVRNGYCS
NGDECLYLHIDPSSRLPPCPHYERGFCPLGPRCDKKHVRRRMCPYYLAGFCPDGRACRLG
AHPKWVADGELEKPKEKEEKAKEDGADEREKEGEREKEKEREREREREREREMQREREMD
RAGRDRDGERGHD
NT seq 759 nt   +upstreamnt  +downstreamnt
gccgcccagctcctcaaccacaccgcgcccagctacaccttcaccttcactcccttccta
cagcgcacctaccagcacagcctcccccccgaccgccccgtctgcaaggcctacctctcc
ggctcgtgcccgctcaaatcacactgcccggaacgacacaccacgccggcgggccacccg
gcatcgcaacgcgacggcggcggaggcggcggcggggggggcggggggttcggctcgctg
gtgtgcaagcactggctgcggggcctgtgcaagaagggggaggcgtgcgagttcctgcac
gagtacaacctgcgcaagatgcccgagtgcaacttcttcgtgcgcaacggctactgcagc
aacggcgacgagtgcctgtacctgcacatcgacccgtcctcgcgcctgccgccctgcccg
cactacgagcgcggcttctgcccgctcggcccccgctgcgacaagaagcacgtccgccgc
cgcatgtgcccctactacctcgccggcttctgcccggacggccgcgcctgccgcctcggc
gcccaccccaagtgggtcgccgacggcgagctggagaagcccaaggagaaggaggagaaa
gcgaaggaggacggcgcggacgagagggagaaggagggagagagggagaaggagaaggag
cgggagcgggagcgggagcgggagcgggagagggagatgcagagggaacgggagatggac
cgggcagggagggatagggacggggagaggggccacgac

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