Thermothelomyces thermophilus: MYCTH_16224
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Entry
MYCTH_16224 CDS
T02231
Name
(RefSeq) hypothetical protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mtm
Thermothelomyces thermophilus
Pathway
mtm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MYCTH_16224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtm03021
]
MYCTH_16224
03019 Messenger RNA biogenesis [BR:
mtm03019
]
MYCTH_16224
Transcription machinery [BR:
mtm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
MYCTH_16224
Messenger RNA biogenesis [BR:
mtm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
MYCTH_16224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_4
zf-CCCH_2
zf-CCCH_9
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
11508431
NCBI-ProteinID:
XP_003658559
JGI:
16224
UniProt:
G2Q1C2
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All DBs
Position
1:complement(<1090919..>1091677)
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AA seq
253 aa
AA seq
DB search
AAQLLNHTAPSYTFTFTPFLQRTYQHSLPPDRPVCKAYLSGSCPLKSHCPERHTTPAGHP
ASQRDGGGGGGGGGGGFGSLVCKHWLRGLCKKGEACEFLHEYNLRKMPECNFFVRNGYCS
NGDECLYLHIDPSSRLPPCPHYERGFCPLGPRCDKKHVRRRMCPYYLAGFCPDGRACRLG
AHPKWVADGELEKPKEKEEKAKEDGADEREKEGEREKEKEREREREREREREMQREREMD
RAGRDRDGERGHD
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
gccgcccagctcctcaaccacaccgcgcccagctacaccttcaccttcactcccttccta
cagcgcacctaccagcacagcctcccccccgaccgccccgtctgcaaggcctacctctcc
ggctcgtgcccgctcaaatcacactgcccggaacgacacaccacgccggcgggccacccg
gcatcgcaacgcgacggcggcggaggcggcggcggggggggcggggggttcggctcgctg
gtgtgcaagcactggctgcggggcctgtgcaagaagggggaggcgtgcgagttcctgcac
gagtacaacctgcgcaagatgcccgagtgcaacttcttcgtgcgcaacggctactgcagc
aacggcgacgagtgcctgtacctgcacatcgacccgtcctcgcgcctgccgccctgcccg
cactacgagcgcggcttctgcccgctcggcccccgctgcgacaagaagcacgtccgccgc
cgcatgtgcccctactacctcgccggcttctgcccggacggccgcgcctgccgcctcggc
gcccaccccaagtgggtcgccgacggcgagctggagaagcccaaggagaaggaggagaaa
gcgaaggaggacggcgcggacgagagggagaaggagggagagagggagaaggagaaggag
cgggagcgggagcgggagcgggagcgggagagggagatgcagagggaacgggagatggac
cgggcagggagggatagggacggggagaggggccacgac
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integrated database retrieval system