Thermothelomyces thermophilus: MYCTH_2050348
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Entry
MYCTH_2050348 CDS
T02231
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
mtm
Thermothelomyces thermophilus
Pathway
mtm03018
RNA degradation
mtm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MYCTH_2050348
09123 Folding, sorting and degradation
03018 RNA degradation
MYCTH_2050348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtm03019
]
MYCTH_2050348
03041 Spliceosome [BR:
mtm03041
]
MYCTH_2050348
Messenger RNA biogenesis [BR:
mtm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MYCTH_2050348
mRNA degradation factors
5'-3' decay
Lsm complex
MYCTH_2050348
Spliceosome [BR:
mtm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
MYCTH_2050348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
11511694
NCBI-ProteinID:
XP_003660235
JGI:
2050348
UniProt:
G2Q1J9
LinkDB
All DBs
Position
1:join(7794268..7794499,7794668..7794739,7794935..7795056)
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AA seq
141 aa
AA seq
DB search
MADRPHRGGHGGHRGARGGGGGGRGGGRGGGAAAAQGQGQGQGQQGQDKERPKKENILDL
KKYMDKRITVKFNGGREATGVLKGYDALMNLVLDEVEELLRGNEMTRPLGLVVVRGTLLV
VISPVDGSEVIANPFLQAEDE
NT seq
426 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcggccacaccgaggcggccacggcggccatagaggggcacgcggcggcggc
ggcggcggacgcggaggaggccgaggcggcggggcggcggcggcacaggggcagggacag
ggccagggacagcagggccaggacaaagagcggcccaagaaggagaacatcctcgacctc
aagaagtacatggataagcgcatcaccgtcaagttcaacggcggccgggaagcgacgggc
gtgttgaaggggtatgatgcgctgatgaacctggtgttggatgaggttgaggagctgctg
cgaggcaacgagatgaccaggccgctggggctcgtggtagtgcgcggcacgctgctcgtt
gtgatcagccccgtcgacgggagcgaggtgatagccaatccgttccttcaagccgaggac
gagtga
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