Thermothelomyces thermophilus: MYCTH_2296319
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Entry
MYCTH_2296319 CDS
T02231
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
mtm
Thermothelomyces thermophilus
Pathway
mtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCTH_2296319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtm03019
]
MYCTH_2296319
Messenger RNA biogenesis [BR:
mtm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
MYCTH_2296319
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_S1
Rrp44_CSD1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
DUF7169
OB_RNB
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
11508047
NCBI-ProteinID:
XP_003659376
JGI:
2296319
UniProt:
G2Q1E1
LinkDB
All DBs
Position
1:join(4165326..4165521,4165590..4168360)
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AA seq
988 aa
AA seq
DB search
MASLKRSLDSDPLAANISSKVYVRSTKSGKVQKIVREVYLRQDIPCSSRLCRRCRDTAPR
DAAGRQTPFVLSEAPAGTSVFPQGHYLVPDTNAFLTAMDLFEQSSAFYDVVVLQVVLEEL
RNRSLPLYNRLISLTKSEEKRFYVFFNEFRLETHVARQEGESVNDRNDRAVRKAVAWYGQ
HLARSGAAKVPAVVMLSNDRDNLRKAKEEGIPACSLAEYVKQLKDADTLLDMIPETETED
QETAKDKRPGEPLYPEYFTMSKMMTGVKNGLLHQGIFNVSPYNYLEGSIRVPAFPKPLLI
LGRENINRAIDGDLVVVEVLPKDQWKEPSTRVIEEDAITKNENPDAEETADIVSEKERKA
LQEEVRRTHSKTTEGHAQPTARVVGVVKRNWRQYVGHIDQSSVSQSAQQGRKQDTVFVIP
MDRKIPKIRLRTRQVAELVGKRILVAIDAWDRSSRHPIGHFVRSLGELETKAAETEALLL
EYDVQYRPFPKTVLDCLPKEGHDWKVPQSTDDPGWRDREDLRHLLICSIDPVGCQDIDDA
LHSRPLPNGNFEVGVHIADVSHFVKPNTAMDAEASIRGTTVYMVDKRIDMLPTLLGTDLC
SLKPHVERYAFSVIWELTADADVVNVRFTKSVIKSREAFSYEQAQLRVDDASQQDDLTKS
IRTLMALSKKLKQKRLDAGALSLSSPEVKVQTESETSDPIDVKTKVLLDTMSLVEEFMLL
ANVSVARKIYEAFPQTAILRRHGAPPKTNFDELADQLRVKRGLELSVESSRALADSLDRC
VDPKEPFFNTLVRIMATRCMMAAEYFCSGTQAYPEFRHYGLASEIYTHFTSPIRRYADLV
AHRQLAAAIGYEPVHPAVRSRGRLEAVCKNINVRHRNAQLAGRASIAYYVGQALRGRAAE
EDGFVLKIFSNGFVVLVPRFGIEGLIRLRDLADPEPAAEYDAETYTLRTRGSREVTVELF
QKVRVRVTDQKDEATGKRGVKMELISVY
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtctcaaacgatccctcgactcagatccgttagcggccaacatctcgagcaag
gtgtatgtgaggtcgacaaagagcgggaaagtccagaaaattgtgcgcgaagtctacctc
cgtcaagacattccttgttcgtcaagactctgcaggagatgccgcgacaccgccccgaga
gatgccgcaggacgacaaaccccgttcgtgctctctgaggcacccgccggcaccagtgtg
ttcccgcagggccactacttggtgccggataccaacgccttcctgacggccatggatctc
ttcgagcagagctcggccttttacgacgtcgttgttctgcaggtcgttcttgaggagctc
cgcaaccgctcgctgcccctgtacaaccgcctgatcagcctgaccaagagcgaggagaag
cgcttctatgtcttcttcaacgagttccgcctcgagacccacgtcgcgcgccaggagggc
gagtctgtcaacgaccgcaatgaccgtgccgtccgcaaggcagtggcatggtacggccag
catctggcccggagcggcgcagccaaggtgcccgcggtggtcatgctgagtaacgatcgg
gataacctccgcaaggccaaggaggaaggcattcccgcctgctctctagccgagtacgtc
aagcagctcaaggacgcagacacgctcctggacatgattcccgagaccgagaccgaggac
caggagacggccaaggacaagcgtccgggcgagcccctttacccggagtacttcaccatg
tccaagatgatgacgggtgtgaagaacggcctgctccaccagggcatcttcaacgtttcg
ccttacaactacctggaaggctccatcagggtcccggcattccccaagccgctgctcatc
ctgggcagagagaatatcaaccgcgcgatcgacggcgacctggtcgtcgtggaggtgctc
cccaaggaccagtggaaagagccgtcgacgcgggtgatcgaggaggatgccatcaccaag
aacgagaacccggacgccgaggagacggcggacatcgtgtcggaaaaggagcgcaaggcg
ctgcaggaggaagtgaggcggacgcacagcaagacgacggagggtcacgctcagcccacc
gccagggtggtcggcgtggtcaagaggaactggcgccagtacgtcggccacatcgaccag
tcgtccgtcagccagtcggcccaacaaggccgcaagcaagataccgtcttcgtcatcccc
atggacaggaagatcccgaagatccgcctgcgcacgcgccaggtggcagagctcgtcggg
aagaggatcctcgtcgccatcgatgcgtgggaccgcagctcccggcatcccatcggccac
ttcgtccggtcgctgggcgagctggagaccaaggcggccgagaccgaggcgctgctcctc
gagtacgacgtccagtaccgtccctttcccaagaccgtcctcgactgcctgcccaaggag
ggccacgactggaaggtgccgcagagcaccgacgacccgggctggcgggacagggaggat
ctccggcacctgctcatctgcagtatcgacccggtcggctgccaggacatcgacgacgcc
ctccattcgcggcccctcccgaacgggaacttcgaggtcggcgtgcacatcgcggacgtg
tcgcatttcgtcaagcccaacaccgccatggacgccgaggccagcatccgcggcacgacg
gtgtacatggtggacaagcggatcgacatgctgcccacgctgctgggcaccgacctctgc
tccctcaagccccacgtcgagcgctacgccttctccgtcatctgggagctgacggccgac
gcggacgtggtgaacgtgcggttcaccaagtcggtcatcaagtctcgcgaggcattcagc
tacgagcaggcgcagctccgggtcgacgacgcgtcgcagcaggacgacctcaccaagagc
atccggaccctgatggcgctgtccaagaagctgaagcagaagcggctggacgcgggcgcc
ctgagcctgtcgtcgcccgaggtcaaggtgcagacggagtcggagacgtcggacccgatc
gacgtcaagaccaaggtgctgctcgacaccatgtcgctggtcgaggagttcatgctcctc
gccaacgtcagcgtggcccgcaagatctacgaggcgttcccgcagacggccatcctccgg
cggcacggggcgccgcccaagaccaacttcgacgagctggccgaccagctgcgcgtcaag
cgcgggctcgagctgagcgtcgagtcgtcgcgcgcgctcgccgacagcctcgaccggtgc
gtcgaccccaaggagcccttcttcaacacgctcgtgcgcatcatggcgacgcggtgcatg
atggcggccgagtacttctgctcgggcacgcaggcctacccggagttccgccactacggc
ctggccagcgagatctacacgcacttcacgtcgccgatccggcggtacgccgacctggtc
gcccaccgccagctggccgccgccatcgggtacgagccggtccacccggccgtccgcagc
cgcgggcggctcgaggccgtgtgcaagaacatcaacgtgcgccaccgcaacgcccagctg
gccgggcgcgccagcatcgcctactacgtcggccaggccctccgcggccgcgccgccgag
gaggacgggttcgtgctcaagatcttcagcaacggcttcgtcgtcctcgtgccccgcttc
ggcatcgagggcctcatccgcctccgcgacctcgccgacccggagccggccgccgagtac
gacgccgagacgtacacgctgcgcacccgcggcagcagggaggtcaccgtcgagctgttc
caaaaggtgcgcgtccgcgtcacggaccagaaggacgaggccacgggcaagaggggcgtc
aagatggagctcatcagcgtttattga
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