Thermothelomyces thermophilus: MYCTH_2298018
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Entry
MYCTH_2298018 CDS
T02231
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mtm
Thermothelomyces thermophilus
Pathway
mtm03013
Nucleocytoplasmic transport
mtm03015
mRNA surveillance pathway
mtm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
MYCTH_2298018
09122 Translation
03013 Nucleocytoplasmic transport
MYCTH_2298018
03015 mRNA surveillance pathway
MYCTH_2298018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtm03019
]
MYCTH_2298018
03041 Spliceosome [BR:
mtm03041
]
MYCTH_2298018
Enzymes [BR:
mtm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYCTH_2298018
Messenger RNA biogenesis [BR:
mtm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
MYCTH_2298018
Spliceosome [BR:
mtm03041
]
Complex C
Other components
EJC/TREX
MYCTH_2298018
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
MYCTH_2298018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
Motif
Other DBs
NCBI-GeneID:
11513314
NCBI-ProteinID:
XP_003660119
JGI:
2298018
UniProt:
G2Q0L2
LinkDB
All DBs
Position
1:join(7425511..7425736,7426403..7426813,7426879..7427239,7427298..7427555,7427617..7427665)
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AA seq
434 aa
AA seq
DB search
MSGEEDLIDYSDDELNNETAAPTSNGKKGDAAAATQNVDKKGSYVGIHSTGFRDFLLKPE
LLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECS
VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDEEILKNKETHPHIIVGTP
GRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSD
EIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYVALQEREKNRKLNELLDDLQFNQVIIF
VKSTLRATELDKLLRECNFPSIAVHSGISQEERIRRYKEFKEFNKRICVATDVFGRGIDI
ERINLAINYDMPADADSYLHRVGRAGRFGTKGLAISFVSSDQDKEVLQQIEKRFEVALPE
FPKEGIDASTYMAS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcgaagaggatcttatcgactactctgatgacgagctcaacaacgagaccgcc
gcccccacctccaacggaaagaagggagatgctgcggccgctacacagaacgtcgacaag
aagggctcctatgtcggcattcactcgactggtttccgcgacttcctcttgaagcctgag
ctccttcgcgccatcgccgactgcggcttcgagcatccgtcggaggttcagcagacatgc
attccccaggcaatgctcggcggcgatattatttgccaggcgaagtctggtctcggcaag
accgccgtcttcgttctcaccacccttcagcaagtcgagccggtcgccggagagtgttcg
gtcctggtcatgtgccacacccgtgaactggcattccaaattcgcaacgagtacaaccgg
ttcagcaagtacatgcccgatatcaagactggcgtgttctacggcggtactcccatccaa
aaggacgaggagatcttgaagaacaaggagacgcaccctcacatcattgtcggcacacct
ggtcgtctcaacgccctcgttcgtgacaagcatctgcgcctgggcaacgtccgcatgttt
gtcctggacgagtgcgacaagatgcttgatcagattgatatgcgccgcgatgtccaggag
atcttccgggccaccccgcagcaaaagcaggtcatgatgttctccgctacgctctctgac
gagatcaagccgatctgccggaagttcatgcagaatccgacggagcactacgtcgacgaa
gacaccaagttgacgctccacggtcttcagcagtactacgtcgctctccaggagagggag
aagaaccgtaagctgaacgagctgcttgacgatctccagttcaaccaggtcatcatcttc
gtcaagagcactcttcgtgccaccgagcttgacaagcttttgcgcgagtgcaacttcccg
tcgattgctgtccactctggcatcagccaggaggagcgcatccgtcggtacaaggagttc
aaggagttcaacaagcgcatctgcgtggctacggatgtcttcggccgtggtatcgacatt
gagcggatcaacctcgccatcaactacgacatgcccgcggatgccgactcgtacctgcac
cgcgtcggtcgtgccggccgtttcggtaccaagggtcttgccatttcgtttgtcagcagc
gaccaggacaaggaggtgctgcaacaaatcgagaagcgcttcgaggtcgctcttcccgaa
ttccccaaggagggcatcgatgcttctacatacatggcttcttag
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