Thermothelomyces thermophilus: MYCTH_2308407
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Entry
MYCTH_2308407 CDS
T02231
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
mtm
Thermothelomyces thermophilus
Pathway
mtm03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mtm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
MYCTH_2308407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtm03021
]
MYCTH_2308407
03019 Messenger RNA biogenesis [BR:
mtm03019
]
MYCTH_2308407
Transcription machinery [BR:
mtm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
MYCTH_2308407
RNA polymerase I system
MYCTH_2308407
Messenger RNA biogenesis [BR:
mtm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
MYCTH_2308407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5_N
Spt5-NGN
CTD
KOWx_SPT5
KOW5_SPT5
KOW4_SPT5
KOW2_Spt5
KOW1_SPT5
KOW
DUF3912
Motif
Other DBs
NCBI-GeneID:
11507186
NCBI-ProteinID:
XP_003665080
JGI:
2308407
UniProt:
G2QJS9
LinkDB
All DBs
Position
5:join(1857747..1858112,1858215..1860447,1860510..1861165)
Genome browser
AA seq
1084 aa
AA seq
DB search
MASNAPFQFAGDSESDDDNFNPAPADMSDEEEDAAADAGNSDRRASSPAADDGQNEMEED
DDRPTKAGKKRPREDDDEEENEGEEEEDEEDAEKNGDDQDEEEEEEEEEEEEEEEEEDED
VHRHRRKRRKDHRAAFFDIEAEVEDEDEAEDEEKEGEEIEDFIDNAHPDDIADSGHLDDD
RRHRELDRRREIEASMDAEKQAEILRARYGKRAPARGYGEMTVVPKRLLLPSVDDPGIWA
VKCKEGKERDIVFSIMRRIEERAGGKDELPITAAFERGGPNSVMKGYIYVEARRQNDILI
ALDGVLDVYPRTKMILVELKDMPDLLRVNKTPSLEPGAWVRLKRPAKHAGDLAQVLDVTE
NGLEARVRFIPRLDYGVRDDTSSSLTADGKRKRPGMPGPRPPQRLFSEAEARKRHPRYIQ
GNPQTNTWTYMGEDFENGFQVKDIKIQHLEIKDVNPTLEEVTKFASGSEDGTENLDLKAL
AASLKDSNASSAYLPGDVIEVYEGEQQGVVGKAVSVQGDIVTLKVTEGDLAGQTIEVPNK
GLRKRFKTGDHVKVIGGSRFRDEVGMVVKIVDDRVTILTDQTNTEVTVFSKDLREASDIG
GQGSLGQYSLLDLVQLDPTTVACIVKVDRESMVVLDQNGDTRQVMPSQIANKLPKRRTAV
AADRNGSEIRLDDVVREYGGQQRQGKIIHIHRSFIFLHSNATTENAGVFVTRAGNVTTVA
AKGGRTANTNSGPDLSTMNPALKRNPAQNQPMQPPKTFGRDRALGQTVSIRRGGYKGLMG
IVKDTTDTDARVELHGKNKIVTVPKADLIFKDKVTGKTIDIYSRSGGPGFGGLGRGGFGS
GDRPGGSRTPMGAGGGERTPAWGVSKAAARTPAWGRAEASGSRTPAWGDGSRTVNPYDGS
RTAYGDGSRTAYGGATSYGGSRTPAWSSSAKTPAHDGFGHGSKTPAYGSSSSDPWGSKTP
AYGASAPTPGASGGDSWGYTPGPSGGSHAYDAPTPGAGLGAPTPAALNAPTPGAYSAPTP
AAASAPTPGAWQGGWGADAAPTPAVGAPTPAASGGYYGAPTPAAYGGAPETPAASGEIRY
ADDD
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaaacgcccccttccagttcgcgggcgattccgagtcggacgacgacaacttc
aaccccgcgcctgccgacatgtccgatgaagaagaagacgccgcagctgacgctggaaac
agcgaccgccgcgcaagcagccctgctgcagatgacggccagaatgagatggaggaggat
gacgaccgtccgaccaaggccgggaagaaacggcctcgcgaggacgacgatgaagaagaa
aacgagggcgaagaggaagaggatgaagaagatgcagagaagaacggagatgatcaagac
gaagaagaagaagaagaggaggaggaggaggaggaggaagaggaagaggaagatgaagat
gtccatcgccatcgtcgcaagcggcgcaaggaccaccgtgctgctttcttcgatatcgag
gccgaggtcgaggacgaagacgaggccgaagatgaggagaaagagggcgaggagattgag
gacttcatcgataatgcgcaccccgacgacatcgcggatagcggccatcttgacgatgat
aggaggcaccgcgagctggaccgtcgccgcgagatcgaggcgagcatggatgcagagaag
caagccgagattttgcgagcccgctacggcaaacgggccccggccaggggttacggagaa
atgacggtcgttcccaagcgcctgctccttccgagtgttgatgaccctggcatctgggct
gtcaagtgcaaagaagggaaggaacgtgatatcgtcttctccatcatgcggcgcatagag
gaacgagccggtggtaaggatgaacttcccatcacagcggcgtttgagcgcggcgggccg
aactcggtcatgaaaggctacatctacgttgaagctcgccgccagaacgatattttgatt
gcgctggacggcgttctcgatgtctatccccggaccaagatgatacttgtcgagttgaag
gacatgccggacctcttgcgcgttaacaaaacgcccagcctggagcccggcgcgtgggtg
cggttgaaacggccggcaaagcacgctggcgacctcgcccaggtcctcgacgtgaccgag
aacggcttggaagcccgggtgcgcttcattccccgactggactatggtgtccgagatgat
acctcgtcctcgcttacggcagatggtaagcggaagcgtcccggcatgcctgggcctcga
cctccccagcgactcttcagcgaagccgaggcaagaaagcggcacccccgttacatccaa
ggcaatccgcagaccaacacctggacgtatatgggtgaagacttcgagaacgggttccaa
gtcaaagacatcaagatccagcatttggaaatcaaggatgtgaacccgacactggaagag
gtgacaaagttcgccagcggttccgaggacggcaccgagaacctcgatctcaaagctctc
gctgcaagcctcaaagacagcaacgcaagctctgcctatctcccgggtgacgtcatcgag
gtgtacgagggcgagcaacaaggtgttgtcggcaaggcggttagtgtacaaggtgacatt
gtcactctgaaggtgacggaaggcgacctggcggggcagacaatcgaggtgcccaacaag
ggtctccgcaaacggttcaagactggtgaccacgtcaaggtcatcggcggtagccggttc
cgcgacgaagtcggcatggtcgtcaagatcgtcgatgaccgtgtcacgatcctgaccgac
cagacgaacaccgaggtgaccgtcttcagcaaggacctgcgcgaggcgagtgatattggc
gggcagggatcgcttggccagtactcgctcctcgaccttgtccagcttgaccctaccact
gttgcctgcattgtcaaggtggaccgcgaatcaatggttgtgctggatcagaacggcgat
accaggcaagtgatgccttctcaaattgccaacaagcttcccaagaggaggacagcagtg
gccgccgatcggaacggttccgagattcggctcgacgacgttgtgcgcgagtatggcggg
cagcagcggcagggcaagatcatccacatccaccggtccttcatctttctccacagcaat
gcgaccactgagaacgctggcgtgtttgtcacgagagctggcaacgtcacaaccgtcgcg
gccaagggcggccggaccgcgaacacgaattccggccccgacctgagcaccatgaacccg
gctctcaagcggaacccggcccagaaccagccgatgcagccgcccaagaccttcggccgc
gaccgcgcccttggccagacggtgagcatcaggaggggtggttataagggcttgatgggt
attgtgaaggacacgaccgacactgatgcgcgcgtcgagcttcacggcaagaacaagatc
gtcactgttcccaaggcggacctcattttcaaggacaaggtgactggtaagacgattgac
atttacagtcggtcggggggacctggtttcgggggccttggacgtggcggatttggatct
ggcgaccgacccggcggcagcagaacgcccatgggcgcgggaggtggagagaggactccg
gcctggggtgtttcgaaagcggccgcccgcacacctgcctggggtcgcgccgaggcatct
ggttcgcgcactcccgcctggggcgacggttcgcgtaccgtcaatccgtacgatggcagc
cggactgcgtacggcgacggcagccgcaccgcgtacggtggtgccacgtcttatggcggc
tctcgcacgcccgcctggtcctcgagcgccaagacgccggcccacgacggcttcggccat
ggctccaaaacgcctgcgtacggctcgtccagcagcgacccctggggctccaaaacacca
gcctacggcgcctcggctcccacgccgggagctagcggcggggacagctggggttacacg
cccggcccgagcggcgggtcgcatgcctacgatgcgcccacccccggtgccggtctgggt
gcgcctaccccggccgcactcaatgctcccacaccgggcgcctactcggcaccaacaccg
gcggccgccagcgctccgacgccgggtgcatggcagggtggctggggcgctgatgccgcg
cccactccggccgtgggggctcccaccccagccgctagtggcgggtattacggcgcaccg
acgccggccgcgtacggcggtgcgccggagacgcctgctgcgtcgggcgagattcggtat
gcggatgacgattga
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