Thermothelomyces thermophilus: MYCTH_2308740
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Entry
MYCTH_2308740 CDS
T02231
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
mtm
Thermothelomyces thermophilus
Pathway
mtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCTH_2308740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtm03019
]
MYCTH_2308740
Messenger RNA biogenesis [BR:
mtm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
MYCTH_2308740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
11510990
NCBI-ProteinID:
XP_003665230
JGI:
2308740
UniProt:
G2QK79
LinkDB
All DBs
Position
5:complement(join(2513166..2514648,2514708..2514898,2514949..2515282,2515348..2515559,2515613..2515975))
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AA seq
860 aa
AA seq
DB search
MESSQDLKSLRDTVHSALVTVTRSVNALANEDLQFQRTVHPSVATRLDQNTERILRLARG
VLKSASNFTSQREPQLEDVDDVEIQWKGVVDVIDSLLEKSDTCLDEYTGLVKRKDAPTAE
LGRELKRSRSTTSRLDWSMKRANILKPQNAFERKIDNFDSGPWKPLMTSKPHARVPLETS
LDTFVDEEGRTQYKHPYEQEITNMQYPEQVYRSCEPIKYLPMETTKAIWVDTYEGVLEML
QELKQATEIAVDLEHHDFRTYAGLLSLMQISTREKDWIVDTLVPWRHKLEVLNEVFADPK
IVKVLHGAFMDVIWLQRDLGLYIVGLFDTFYASDTLGYAGKSLAFLLKKFADFDADKKYQ
LADWRIRPLPEEMFYYARSDTHFLLYIYDMLRNELAELASQNNPDGNPIDRVIQKSKEVS
LQRYEHPVCDPETGAGNRGWYNTLIKSPTLYNGEQFAVYKAVHKWRDDVARQEDESPFFI
MTQQVLSDIARIIPTDMKALWSLLESNARGLKGRLEELFQVIQEARARGVNGPTMLQFFR
ELSSGASQTSLGVRKVAAAAAEDSEPLSIEELKCDRSQLWGDVALNSSLDGTSKARPIRE
EDMIPLYTFDFGAIKEELPETNQPSPRRVAEQDTKGLPVLEEEGFTLKAGRKRKSRDVDV
ESASEAEAVSDIEMGGDSSAGKDHPKSPSVEQEVEGGDDKAAKQAKKQAKKAAREEFKRA
QLLAEQLAQNGDIKGAKELKAQARKALRAAKKAQKQQQQQQQQTSASAATSAADEQTSGE
QEEGHDDDAEQEPFDYSKASSVLHAAQATNGDDGDDDGGRKEVRGKFAPFDPYGMKSGDA
PQGARKMNHVKGGRTATFKK
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggagtcatctcaggacctcaagtcgttgcgggacaccgttcattctgcgctggtcacg
gtaacacggtctgtcaacgcgctcgcaaacgaggacctccagtttcagcggacagtccac
ccttcggtcgcgactcgcctcgatcagaatacggaacgtatcctgcgattagcgcgcggc
gtccttaagtcggctagcaacttcacctcccaacgggaacctcagctggaagatgtggac
gatgtagagatccaatggaaaggcgtggtggacgtgattgactcgctcttggagaagtcg
gacacttgcctggacgagtacacgggtctggttaagaggaaagatgcgccgactgccgaa
cttggccgagagctcaaacgctcgagatcgaccaccagcaggctcgactggtcgatgaag
cgtgccaatatcttgaagccccagaacgctttcgaaaggaagatagacaattttgattcg
ggaccatggaagcctctaatgacaagcaaacctcacgctcgtgttccgctggagacgagt
cttgacacctttgtcgacgaagaaggccgcacccagtacaagcatccgtacgagcaggag
atcaccaacatgcaatatcccgaacaggtctatcggtcctgcgagcccataaagtatctg
ccgatggagacgacgaaggcaatctgggtcgacacctacgaaggggttttggagatgctg
caagaactgaagcaggcaaccgagattgctgtcgatctagagcatcatgatttcaggact
tatgcagggcttttatcgctgatgcaaatcagcacaagagagaaggactggatagttgac
acactggttccctggagacacaagctcgaggtgctcaacgaagttttcgcggacccgaag
attgtcaaggtacttcatggcgcgtttatggacgtcatctggctccagcgagaccttggg
ctctatatagtgggcctttttgatactttttatgccagcgacaccctcgggtatgcaggc
aagagtttggcgttcttactgaagaagttcgccgactttgacgcggacaaaaagtatcaa
cttgcggattggcggataagacctctccccgaagagatgttttactacgctcgatcagac
acacacttcctgctttacatttacgacatgctgcggaacgagcttgccgagcttgcctct
cagaataaccccgatggaaacccgatcgaccgtgttattcagaagtcgaaggaggtgtct
ttgcagcgttacgagcaccccgtctgtgaccctgagactggagccggcaaccggggttgg
tacaatactttgatcaaatcaccgacgctgtacaacggcgagcagttcgccgtctacaag
gcggtgcacaagtggcgggatgatgtggcccgccaggaagatgagagcccgttcttcatt
atgacccagcaggtcctcagcgacatagcacgcatcattcccaccgacatgaaggctctg
tggagtctattggagtcaaacgcacgggggctcaaaggtcgtctcgaggagctatttcag
gttattcaagaagctcgggcaaggggtgtgaacggccccaccatgcttcagttcttccga
gaattgtcatcaggcgcctctcagacttcgctcggggtcaggaaggtggcagctgccgcg
gcagaggacagtgagccgctcagcatcgaagaactgaaatgtgaccgctcccagctctgg
ggggatgtggcgctcaactcgtcgttagacgggacgtccaaggcccggccgatacgcgag
gaagatatgattccgctgtacacgtttgactttggtgctattaaggaggagttgccggaa
accaaccaaccgtcacccaggcgtgtcgctgaacaagacaccaagggtctccctgttctc
gaagaagaaggtttcactctgaaggctggtcgaaagcggaagtctagggatgttgatgtt
gagtcagcatccgaagccgaagcagtttccgacatcgagatgggtggagatagttccgca
ggcaaagaccacccgaagtctcctagtgtcgagcaggaagttgagggtggtgatgacaag
gccgccaagcaggcaaagaaacaagccaagaaggctgctcgagaagagttcaagcgtgct
cagctcttggcagagcaactggctcaaaacggagacataaagggagcaaaggaactcaag
gctcaagccaggaaggcacttcgagccgccaagaaagcccagaagcagcagcagcagcag
cagcagcagacatctgcctccgccgcgacctcggcagccgacgaacagacctcgggcgaa
caggaggaaggccatgatgacgatgccgagcaggagccgtttgactacagcaaggcgtcg
tccgtgctacatgctgcgcaggcgacaaacggcgatgatggtgatgatgatggcggcaga
aaagaggtgcggggcaagtttgcaccctttgatccgtacggcatgaagtcaggggatgcg
ccacaaggcgcaaggaaaatgaatcacgtgaagggagggaggacggcgacctttaaaaaa
tga
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