Medicago truncatula (barrel medic): 112416797
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Entry
112416797 CDS
T01716
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112416797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
112416797
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112416797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
ATPgrasp_ST
Motif
Other DBs
NCBI-GeneID:
112416797
NCBI-ProteinID:
XP_024627300
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All DBs
Position
7:9952621..9958729
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AA seq
306 aa
AA seq
DB search
MKNIASFVSPIGASIKSSTTTQSMSSMERLVIELSNPDLRENALRVLSKFQRIRLFPELA
PLLWNSYGTIAILVQEITSIYPTIQLLNLTQTQSTRVCNVLALLQCVASHPDTKMSFLNA
SMPLYFYPFLQTTSELAQFEHLRLASLGVIGALVKSQVNTKESIDFLLRSEIIPLCLCNM
EIGKELSKTVATFIIQKIMSNDDGLIYICGTAERFFAVVQVFNMVLESVGNQPSHRLMKL
LIPCYSLLSQHHRACNALKRRLPNMLKTVNTVNCLREDEITWSWVMKLHENIGVNQVPLV
PGGGNQ
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacattgcgtcgtttgtaagtcctataggtgcttctatcaaatctagcaccact
acacaaagcatgtcatccatggaacgccttgttattgaactcagcaatcctgatctcagg
gaaaatgctcttcgtgttctctccaagtttcaaaggatcaggttatttccagaacttgct
cctttattatggaattcttatggtactattgcaatacttgtacaggaaataacttcaata
tatcctactatccaactgttgaatcttactcagacacaatcaactcgagtgtgcaatgtt
ctggcactacttcagtgtgtggcatctcaccctgatacaaaaatgtcatttctcaatgct
agcatgcctttatatttttatccattccttcaaacaacaagcgagttagcccaatttgag
catttaagacttgctagtcttggagtcatcggtgcgttggtgaagtcacaggttaacacc
aaagaaagcatagattttcttcttagaagtgagataattccactatgcctatgcaatatg
gaaatcggcaaagaattatccaaaactgttgcaacatttataattcaaaaaattatgtca
aatgatgatggtttgatttatatttgtggaacagcagaacgtttttttgcagtagttcaa
gtttttaacatggtattggaaagtgttggcaatcaaccttcacatcgattgatgaaactt
ctgattccatgttattctcttttgtctcaacatcatagggcttgcaatgcattaaaaagg
cgacttccaaatatgctgaaaactgtcaataccgtcaattgccttcgcgaagatgaaata
acttggagttgggtaatgaagttgcatgaaaatattggggtgaaccaggttcccttagta
ccaggtggtgggaatcaatga
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