Medicago truncatula (barrel medic): 112418725
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Entry
112418725 CDS
T01716
Name
(RefSeq) 5'-3' exoribonuclease 3 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03008
Ribosome biogenesis in eukaryotes
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112418725
09123 Folding, sorting and degradation
03018 RNA degradation
112418725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
112418725
03019 Messenger RNA biogenesis [BR:
mtr03019
]
112418725
03009 Ribosome biogenesis [BR:
mtr03009
]
112418725
03016 Transfer RNA biogenesis [BR:
mtr03016
]
112418725
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112418725
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
112418725
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
RNases
112418725
Transfer RNA biogenesis [BR:
mtr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
112418725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Lin-28A-like_zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
112418725
NCBI-ProteinID:
XP_024631199
LinkDB
All DBs
Position
1:7934337..7943628
Genome browser
AA seq
1069 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVIADAVEEEPVVIEGVQIPIDTSKPNPNNLEYDNLYLDMNGIIH
PCFHPEDRPSPTSFEEVFECMFDYIDRLFNMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
AAKDASDAAIEESRLREEFEREGRKLPPKEESATFDSNVITPGTEFMAVLSVALQYYVHL
RLNNDPGWSNIKVILSDANVPGEGEHKIMSYIRLQRNLEGFNPNTRHCLYGLDADLIMLG
LATHEVHFSILREVVFTPGQDKCFLCGQMGHMAANCEGKAKRKSGEFDEKGDAIVAKKPF
QFLNIWTLREYLEYEMRIPNAPFEIDFECILDDFIFICFFVGNDFLPHMPTLEIREGAIN
LLMAVYKKELKGMGGYLTNGSKPNLSRVEHFIQAVGSYEDSIFQKRARMEQRTVERIKRQ
KSQARRGDDVGPQVQPESLVAVSKFHGSRLASAPTPAPFQQSGPTSVRKGNKEVFERPSK
VSKLSSGATAAAAIVEAENSLEIDVEDNQDDLKIKLKGILRDKSDVFNSKGGHEDKIKLG
EPGWKERYYEEKFSAQTPEELDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAP
FASDLKGLGELNINFELGTPFKPFDQLLGVFPAASSHALPEPYRKLMTDPTSPIIDFYPI
DFDVDMNGKRYAWQGIAKLPFIDEVRLLQEVRKVENLLTPEEKRRNAIMFEMLFVNSCHP
LSACISTLDNKCRNMSNSERADVKEKIDPVERDTCSGGMNGYISLCSGEPCPPIFRSPIA
GMEDIMDNHVICAIYRLPDAHEHIARPPHGVKFPKKTVTIGDLKPEPIPWHEDNGRRYNE
SGRKNPPGSVSGRELGEAAHRLVANSLQIRTDGNRYHHPNGSTMPYNGPRGHRQSWPRNN
YESHPGYNYESRPGYAAIPPPLSAPPQYVPYAAAPTAHYGYNQPYSPPVIPSPHQHHSNS
FPRGDQNPRSHHSDRNSHHVNGGNARHSSGNNQNPRFSNTQGSFPRQGHHHDAGRHNQHF
QPYRADQHWTPRGNPSGYREYGQHSANQYSLLDKGASRKPMPPPGHNHK
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggccttctataggtggctcgccgagaaatacccgatggttattgccgat
gcggttgaagaggaaccagtggttatcgaaggcgttcaaattccgatagacaccagcaaa
cccaaccctaataaccttgaatatgataatctctatcttgacatgaatggaatcattcat
ccttgttttcatcctgaagataggccatccccgacctcttttgaggaggtgtttgagtgc
atgtttgattacattgataggctgtttaacatggtgcggcctaggaagcttctctttatg
gctattgatggtgttgcaccgagggctaaaatgaaccaacaacggtcaaggcggtttagg
gctgctaaagatgcatctgatgcggctattgaagaatcaaggttacgagaggaatttgag
agggagggcagaaaacttcctcctaaagaggaatcggcaacttttgattcaaatgtcatc
acacctggaactgaattcatggctgttctgtcagttgcactacagtactatgtgcatctt
aggttgaacaatgatcctggttggagtaacataaaggttattctttctgatgcaaatgtt
cccggtgaaggggagcataagattatgtcctatatccgccttcaaagaaatcttgaagga
ttcaatccgaatacacgacattgcctgtatggtttggatgctgatttgattatgttgggt
ctggctacccatgaagtccatttttcaattcttagagaggttgtatttactcctggtcaa
gacaaatgcttcctgtgtggtcaaatgggtcatatggctgcgaactgtgaaggaaaggct
aaaaggaagtcaggagaatttgatgaaaaaggagacgctattgttgctaaaaagcctttc
cagtttctgaatatttggactctgagggaatatctggagtatgagatgagaatacctaat
gctccttttgagatcgattttgaatgcatattggatgattttatcttcatatgctttttc
gttggcaatgatttcctaccacatatgcctacactagagattcgtgagggtgcgatcaac
ttgctgatggcagtatacaagaaggaacttaagggaatgggtggctatttgacaaacggt
agcaagccaaatttgagcagagttgagcattttattcaggctgttggatcatatgaagat
agcatattccagaaaagagctcgaatggaacagcgaacggtggaaagaataaagcgtcag
aagtcacaagcaagaagaggagatgatgttgggcctcaagttcaacccgagtctctagtt
gcagtttctaaattccacggttctcgtcttgcttcagctccaacgcctgcaccatttcaa
caatctgggcccacctcagttagaaaaggcaataaagaagtctttgagaggcccagtaaa
gtttctaagttatcttcaggagcaactgctgctgctgcaattgttgaagccgagaatagt
cttgaaatagatgttgaagataaccaagatgacttgaaaataaagctgaaggggatactt
cgtgacaaatctgatgtgttcaactcaaaaggtggtcatgaggacaagatcaagttggga
gaaccaggctggaaagagaggtattatgaggaaaaattttctgctcagactcccgaggaa
cttgatgctatacggaaagatgttgtcttgaaatacaccgagggtctatgttgggtgatg
cattattactatgaaggtgtttgttcttggcaatggttttatccttatcattatgccccc
tttgcatctgatctgaagggccttggtgagcttaatattaactttgagttgggtactcca
ttcaaaccatttgatcagcttcttggagtttttcccgctgcaagctctcatgcgctgcct
gagccgtataggaaacttatgactgatccaacctcgccaattattgacttttatccaata
gactttgatgtggacatgaatggcaaacgctatgcttggcagggtattgcgaagttgcct
tttattgatgaagtgcgtcttcttcaggaagttcggaaagtcgaaaacttgttaacaccg
gaggaaaagcgacgaaatgcaataatgtttgagatgctttttgtgaattcatgtcatcct
ctctctgcgtgcattagtacactcgacaacaaatgtagaaacatgtccaactctgaacgt
gctgatgttaaggaaaaaattgaccccgttgaaagggatacatgcagtggtggaatgaat
ggttacatatccttatgtagtggagaaccttgccctcccatcttcaggtcccctattgca
ggcatggaagacatcatggataatcatgtcatatgtgcaatatatagacttccagatgca
catgaacatatagctcgaccaccacatggagttaagtttccaaagaagactgtgacaatt
ggggatctaaaacctgaacctattccatggcatgaagataatgggaggagatacaacgaa
agtggaaggaaaaaccctccgggctccgtttctggtcgcgagcttggagaggcagcacac
agactcgttgccaattccttacagatcaggacggatggaaatagataccatcatcctaat
ggatcaacgatgccttataatggaccaaggggtcacaggcaatcatggcctcgtaataac
tatgaatcacaccctggctataactatgaatcacgcccaggctatgctgcaattccaccg
cctttatcagctcctccacagtatgtaccttacgctgctgctcctactgcgcattatggt
tataaccaaccatactctccacctgtaatacctagtcctcatcaacatcactcgaattcc
tttccaagaggtgaccaaaaccccagatcacatcattctgatagaaatagccaccatgtt
aatggcggaaatgcaaggcattcctcaggaaacaatcagaatccccggttttcgaatact
caaggttcatttccccgtcaaggtcaccatcacgacgctggtcgccacaatcaacacttc
caaccatatagagctgaccagcattggactccacggggtaaccctagtgggtacagggaa
tatggtcaacattcagccaatcaatattctctattagataaaggagcaagtaggaagcca
atgcctccacccggtcataatcacaaataa
DBGET
integrated database retrieval system
