Medicago truncatula (barrel medic): 112419329
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Entry
112419329 CDS
T01716
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor RSE1-like
KO
K12830
splicing factor 3B subunit 3
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112419329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
112419329
03041 Spliceosome [BR:
mtr03041
]
112419329
03036 Chromosome and associated proteins [BR:
mtr03036
]
112419329
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
112419329
Spliceosome [BR:
mtr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112419329
Complex B
112419329
Complex C
U2 SnRNP specific factors
112419329
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
112419329
TFTC complex
112419329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
112419329
NCBI-ProteinID:
XP_039686884
LinkDB
All DBs
Position
2:10360557..10366669
Genome browser
AA seq
1143 aa
AA seq
DB search
MCGKDLLVAISDSGNLSVLAFCNEMNRFFPLTHVQLSNLGITRNFCILAVDSSGCFIAAS
EYEDQLALFSVSMSDNDIIDKKIIHPFDSGETESASINMKSTSICGTIWSMCFISLDSRQ
TSTAKNPLLVAIILHRRGETLNELLLLEWNVKSQTTTVVSQYVEDGPLAHNIVEVPNSKG
LAFLFRXGDGLLMNFRDPCNPFFVYRTSLNSFPVAVEDLCIRGTRKDATLNKKAANYHPV
RKDDDNGDTNLGRKYICSWSWEHGNNEVPRMIFCVDTGEFFMIEVCFDSDAPKVKQSDCL
YKGLPCKELLWVKGGYLVAIVEMGDGVVLKLEDGRLCFTDSILNMAPILDVAHEEEHGQM
FACCGVAPEGSLRIIQSGISVEKQCRVGYIYEEVVSTWAVLMKVTDSYHSFIVLSFVSET
RVFPVSLSFKDVTASVGFQPNVCTLACGLVMDSLLVQIXQNSVKLCLPTNSAHHEGTPLS
SPNCTFWHPRNMNISLGAVGHNFIVVSTTNPCSLFILGVTYLSAYEYEVFEMKHLKFQNE
ISCISIARQNIGEKQSNSSILENNSFVIGTHRPSVELWSFAPDGEVIIIAHATISLNNAI
CIPQDVHLVFVGKYYVLAGLKNGMLLRFEWPSELFHSTTKAFEKLNDLPSVLQLITIRHI
GINPVFLVPLDDTLDADIIALSDKPWLLHTARQGLSYTSINVQSSSHLTPICTSECPQGI
LLVAENSLHLVEMFPNKRLNMQKFHLEGTPRKVLYHNESGMLLVMRTELNHGTYSSDICC
VDPLSGSVLASFELEHGEVKSMELVKFGSKLVIVVGTSLSSKSASLSQKTSPFHELVVHY
LEPLSSCSLSSIPDNNSLDGIKLGNKNETWQFXVVCATIWNGIPLAICPYLDHYFLASSG
NTFYVCALEYDTTLIGRVKVIKYATERTRFIIKSLTAHCSRIAVGDGRDGIIFFSYDEDA
QKLSFFSGDPSQRLVADCTLMDDNTAFVFRSFGRVYMYRIQFETKLCLFHGFLEQFNLSF
LFFIAVLGDMVPNTNVDSLQNAVIASTLSGNIMIFFPLSREEYKLLEAAQAKLVVHNLTA
PILGNDHDEFRSRENPVGVPKILDGDILTQFLELTCMDQNTILQSQMVKKVVQILDGVNY
ALN
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggcaaagaccttttggttgctatatctgattctgggaacctgtcggtgctcgca
ttttgcaatgaaatgaacaggttttttccattaacacatgttcagctatctaatcttgga
ataacgagaaacttttgtatactagccgttgattccagtggttgttttattgcagctagt
gaatatgaagatcaactagctctattttctgtgtcaatgagtgacaatgatatcattgat
aagaaaataatacatccttttgatagtggagagacagaaagtgcttccataaacatgaag
agtaccagcatctgtggtactatttggagtatgtgctttatttcactagattccagacaa
acaagcacggcgaagaatcctctattagtagcaattattctacataggaggggagaaact
ctaaatgaattgctattattggaatggaatgttaaatcacagacaacaactgttgtttct
cagtatgttgaagatgggcctctagcacataacattgttgaagttcccaactcaaaggga
cttgcatttttgtttaggnctggtgatggtctcttaatgaactttagagatccttgcaat
ccattttttgtgtataggactagcttgaattcttttcccgttgccgtggaagacttgtgt
attagaggaactaggaaagacgcaacattgaataaaaaggcggctaattatcatcctgtg
cgtaaagacgatgacaatggtgatactaatttgggtcgcaagtatatatgctcttggagt
tgggaacatggcaataatgaagttcctaggatgatcttttgtgtagatactggggaattt
tttatgattgaagtttgttttgattctgatgcccctaaagtcaaacaatctgactgtctc
tataaaggtctaccttgtaaagaattgttgtgggttaaaggcggatatctagtagcaatt
gtagaaatgggggatggtgttgtcctgaaattggaagatggaaggctatgctttacagac
tctattctgaacatggcaccaatattggatgtggcgcatgaagaggagcatggccaaatg
tttgcttgctgtggtgtggcacctgaggggtcattaaggattattcaaagtggtattagt
gtggaaaagcaatgcagggttggttatatatatgaagaggtagtcagtacttgggctgtc
ctgatgaaagttactgattcttatcattcttttattgttctatcatttgtttcggagacc
agagtatttccggttagtttaagttttaaagatgtgactgcttcggttggtttccaacct
aatgtctgtactttggcatgtggccttgtaatggatagtttgcttgttcagatcntacaa
aattctgttaaactttgtttgcctactaattctgctcatcatgaaggcacccctttgtcc
tctcccaattgcacattttggcatccacgcaatatgaatatcagtttgggggcagttggg
cataatttcatagttgtgtcaaccactaacccgtgctctttgtttatcctcggggttaca
tatctatcagcttatgaatatgaagtatttgaaatgaaacatttgaaatttcagaatgaa
atatcatgcatttccatcgccagacaaaatataggagaaaaacagtcaaattcatctatt
ttagaaaataatagctttgttattggcacacataggccttctgtggaactttggtctttt
gctccagatggagaagttataattattgctcatgcgacaatttcattaaataatgcaatt
tgtatacctcaagatgtacaccttgtatttgttggtaagtattatgttcttgctggattg
aagaacggaatgcttcttcgctttgagtggccatcagaattgtttcactctacgactaaa
gcttttgaaaaattaaatgaccttccttccgtgcttcaattgattaccattcgtcacatt
ggcattaatccagttttcttggtgcccttggatgacacccttgacgctgatataatcgca
ttgagtgataagccttggttattgcatactgcaagacaaggcctttcctatacttctatc
aatgttcaatcttcgtcacatttaactcctatttgcactagtgagtgtccgcaaggaata
ttacttgttgcagaaaacagcttacatctggtggagatgttccccaataagagacttaat
atgcagaagtttcatttagagggaactccacggaaggttctgtatcacaatgaaagtggg
atgttgcttgtaatgaggactgaactgaatcatggtacatattcgtctgacatatgttgt
gtggatccactaagtgggtcagtactggcgtcttttgaacttgaacatggagaagtaaaa
tcaatggaactagtcaagtttggaagtaagctggtgattgtggttggaactagtctttct
tcgaagtcagcatcattatctcaaaaaacttcacctttccacgaattagttgtacattat
cttgaaccactatcaagttgtagcctcagcagtatccctgataacaatagtttggatggc
atcaaacttggtaataaaaatgaaacgtggcagttctgagtggtttgtgcaactatatgg
aatggaattccacttgctatctgtccttatcttgatcactacttcttagcatcttcagga
aatactttctatgtctgtgctttagaatatgacactactttgattgggagagttaaagtg
ataaagtatgctactgaaaggacacgtttcatcataaaatctttgacagcacattgttct
agaattgcagttggtgatggtcgtgatggtatcattttcttttcttacgacgaggatgca
caaaaattgtcatttttctccggtgacccatcacagaggttagtagctgattgtactctc
atggatgataatacagcttttgtgttcagatcatttggaagggtctacatgtacagaatt
caatttgagactaagctgtgcttatttcatggtttcctagagcaatttaatttatcattc
ttgtttttcattgcagtgctaggtgacatggtccccaatacaaatgttgactcactacaa
aatgctgttattgctagtactctctcaggaaacataatgatcttcttccctttgtcaagg
gaagaatataagctcttagaagctgcgcaagcaaaacttgttgtccataatttgactgca
cctattcttggaaatgatcatgatgagtttcggagtcgcgaaaatccagttggagtaccc
aagatactagatggggacatactgactcagtttctggagctaacatgtatggaccaaaat
accattttgcaatcgcagatggtaaaaaaagtggttcaaattcttgatggagttaactat
gcacttaactaa
DBGET
integrated database retrieval system
