Medicago truncatula (barrel medic): 11405950
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Entry
11405950 CDS
T01716
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
11405950
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
11405950
NCBI-ProteinID:
XP_013469103
UniProt:
A0A072VNC2
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Position
1:complement(41895388..41900642)
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AA seq
1124 aa
AA seq
DB search
MSTTRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGEHQ
PRSNKVTTAYLNTIQRGKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDH
PALGIGTDIRTIFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLII
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM
AYKFHEDDHGEVIAEVTKTGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKV
LQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQK
KKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEFQILEKNILRTQTLLC
DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYRNKLWILGATPSEPQIREIALWMSEYHTD
STGLSTDSLSDAGFPGALKLNDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGE
QDDGRKMHPRSSFKAFLEVVKARSIPWKDFEMDAIHSLQLILRNASKDTDMIDLNSKAIN
TRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGMVNGWNIKISELTGLPVGEAI
GKHLLTLVEDSSTDIVKKMLNLALQGQEEKNVQFEIKTHGSKTDCGPISLIVNACASRDL
HENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAA
MIKITGWKREEVMDKMLLGEVFGTHMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGF
LSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLT
YMRRQIRNPLSGIVFSSKMLENTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIIDGYL
DLEMAEFTLHEVLVTSLSQVMNRSNTRSIRIVNDVAEHIAMETLYGDSLRLQQVLADFLL
ISINSTPNGGQVVIAATLTKEQLGKSVHLVNLELSITHGGNGVAEAVLNQMFGNNGLESE
EGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAQKLRG
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccacaaggcctagccaatcatccaacaactcagggagatcaagaaatagtgct
aggattattgctcagacgacggtagatgcaaaacttcatgcaacttttgaggagtctggt
agttcctttgactactcaagttcggtgcgcgtctctggctcagttgatggagagcatcaa
ccgaggtccaacaaagtaacaacagcttacctcaatacaatacaaagaggcaagcagatc
cagccttttggttgcttgctagctttagacgagaaaacgtgcaaggttattgcatacagt
gagaatgcacccgaaatgctgaccatggtgagtcatgctgtccctagtgtcggtgaccac
cctgcccttggcattggaactgacataagaactatcttcaccgcaccgagtgcttctgcg
ctacagaaggcactgggatttgcggaggtttcgcttcttaaccctatccttgttcattgc
aagacttctgggaagccattttatgcgatcattcaccgtgttacaggtagtttgatcatt
gactttgagccagtgaagccttacgaagttcccatgactgcagcaggcgcattacagtct
tacaaacttgctgctaaagcaattacaagattgcaatctttgcctagtggcagcatggaa
aggctttgcgatacaatggttcaagaagtttttgaactaacgggttatgacagggtgatg
gcttataaatttcacgaggatgatcatggggaggtgattgctgaggtaacaaagacaggc
ctagagccatatctaggattgcactatccggccacagatattccccaggctgcgcgcttt
ttatttatgaagaacaaggtccgtatgatagttgattgtcacgcaaaacatgtgaaggtt
cttcaagacgaaaaactcccatttgatttgactttgtgtggttcgaccttaagggcccca
catagttgccatttgcagtatatggctaacatggattcaattgcttccttggttatggct
gtagtagtcaatgacagcgatgaagatggagatagcgctgatgcagttctcccacaaaag
aaaaagagactttggggtttggtagtttgtcataacactacaccaaggtttgttcctttt
cctctaaggtatgcttgtgaatttctggctcaagtatttgccatccatgtgaacaaagaa
atagaattagaatttcagattcttgagaagaatatcctgcgcacacagacgctgttgtgc
gatatgctgatgcgagatgcacccttaggtattgtatcacaaagccctaatataatggat
ctagtgaaatgtgatggggctgcactcttgtatagaaacaagttatggatattaggagcg
acgccgagtgaacctcagataagagagatagctttatggatgtccgagtaccatacggat
tcgactggtttgagtacggatagcttgtctgatgcagggtttccaggggctcttaaactt
aatgatactgtatgtggaatggcagctgttagaataacttcaaaagacatagttttctgg
tttaggtcgcacaccgctgcagaaatccgatggggtggtgcaaagcatgaacctggcgaa
caggatgatggtaggaagatgcatccaagatcatcatttaaggctttcctcgaagttgtg
aaggctaggagcataccatggaaagactttgaaatggatgctattcattcgttacagtta
atactgagaaacgcgtccaaagatacagatatgattgatttaaactcaaaggcaatcaat
acaagactaaatgatttgaagatcgaagggatgcaggaattagaagcagtgacaagtgag
atggttcgattaattgaaacagcaacagtgcctattttggcagtggatgttgatgggatg
gtcaatggttggaatatcaaaatttccgagttgacaggtcttccggttggcgaagctatt
ggaaaacatttgctcacacttgttgaggattcttcaacggatatagttaagaagatgctt
aatctggcactacagggtcaagaagagaagaatgttcaattcgagatcaaaacacacggg
tctaagacggattgcggtcctattagtttgatagttaatgcttgtgcaagcagggatctt
catgaaaatgtagtgggagtttgttttgtggcccaagatataactgctcagaagacagtc
atggacaaattcacccgaattgaaggagattacaaggcaattgtacagaaccctaatcaa
ttaatccctcctatattcggtacagatgaatttggctggtgttgtgagtggaatgcagct
atgataaagataactggatggaagcgagaggaggtgatggataaaatgcttctaggagag
gttttcggaactcatatgtcttgctgtcgtctaaagaatcaagaagctttcgttaatttc
ggcattgtacttaataaagccatgactggtttggaaacagaaaaggttccttttggtttt
ctctctcggaagggaaagtatgtagagtgcctactttctgtgagtaagaaaatagatgca
gagggcctagttaccggggtattctgtttcttgcagctagctagcccggagctgcaacaa
gcattacatattcagcgcctatctgaacaaaccgctctcaagagactgaaagtattaact
tatatgagaaggcaaatcaggaatcctttgtcagggattgtgttttccagtaaaatgttg
gagaatactgagttgggaactgaacaaaaacgaattgtgaacactagttctcagtgccag
cgccagctaagcaaaattctcgatgactcggatctagacagcatcattgatgggtacttg
gatctcgagatggctgaattcactctgcatgaggtactggtgacctctcttagtcaagtc
atgaataggagtaacacaaggagtatcagaatagtgaatgatgttgcggagcatatcgcg
atggaaaccttgtatggtgatagtcttagacttcagcaggtcttggctgacttcttactg
atttccatcaattccacaccaaatggaggtcaggttgttatagcagccactctaactaaa
gaacagttagggaaatctgtccatcttgttaatttggagctcagcataacacatggtgga
aatggggtggcagaagcagtgttaaaccagatgtttggaaataatgggctagaatcagag
gagggtattagcctacacatcagtagaaaattgttaaagcttatgaacggcgatgttcgt
tatttaaaagaagcaggaaaatcatcttttattctatctgttgaacttgcagcagcccaa
aagttgagaggttaa
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