KEGG   Medicago truncatula (barrel medic): 11406653
Entry
11406653          CDS       T01716                                 
Name
(RefSeq) THO complex subunit 4D
  KO
K12881  THO complex subunit 4
Organism
mtr  Medicago truncatula (barrel medic)
Pathway
mtr03013  Nucleocytoplasmic transport
mtr03015  mRNA surveillance pathway
mtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    11406653
  09122 Translation
   03013 Nucleocytoplasmic transport
    11406653
   03015 mRNA surveillance pathway
    11406653
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mtr03019]
    11406653
   03041 Spliceosome [BR:mtr03041]
    11406653
Messenger RNA biogenesis [BR:mtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     11406653
    TREX complex
     11406653
Spliceosome [BR:mtr03041]
 Complex C
  Other components
   EJC/TREX
    11406653
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    11406653
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 11406653
NCBI-ProteinID: XP_003600719
UniProt: G7J9D5
LinkDB
Position
3:complement(33113300..33124375)
AA seq 291 aa
MASSLDISLDDRIKSRSNRGRGRGRGKALSGRGSGTLGGGRRTGAVNGRRTSNGGRTGAV
RRGPLNVNTRASSYAIAKSIRRPKTLAWQSDLFEDSLRAAGIQGVEADTKLYVSNLDRGV
TNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMK
IEIVGTNSALPVTARVNVSSMNVSAMNGQRKRTVVMTPRGGRGGGPAMLNRGAGWGRRGG
SRGGSGSMRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMQT
NT seq 876 nt   +upstreamnt  +downstreamnt
atggcttcttccttggatatttcccttgatgatagaattaagagcagaagtaacagaggc
aggggcagaggacgtggcaaagccctttctggccgtggaagtgggactctaggaggtgga
aggaggacaggtgctgttaatggtagaaggactagtaatggtggaagaactggtgctgtt
cgtagaggcccacttaatgtcaacactcgcgcgtcatcttatgctattgccaagtctatt
cgcagacccaagactcttgcatggcagagtgatttgtttgaggatagccttagagctgca
ggaattcaaggagtagaagctgacactaagttgtatgtttccaatttggatcgaggagtg
accaatgaagacataagggaacttttctctgagcttggggagttgaagcgctatgcggtt
cattatgacaaaaatggacacccaactggttcagctgaagttgtctacaatagaagaagt
gatgcatttgctgctctgaaacgatacaacaatgtgcttttggatggaaagcccatgaag
attgagattgttggaacaaattcagcattgcctgtgactgcacgggtgaatgtctcttca
atgaatgtctctgcaatgaatggacagaggaagaggactgttgtaatgacgcctagaggt
ggtcgaggtggaggtcctgccatgctgaatcgtggtgcaggttgggggcgtcgtggtggc
tcaaggggtgggagcgggagcatgcgtggacgtggtcgaggccgtcctggcaggggtgga
ggtcgaggtcgtggaagaaaggatggagttgagaagtcagctgagcagcttgacaaggaa
ctggagacctatcacgcagaggctatgcaaacatga

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