Medicago truncatula (barrel medic): 11406653
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Entry
11406653 CDS
T01716
Name
(RefSeq) THO complex subunit 4D
KO
K12881
THO complex subunit 4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11406653
09122 Translation
03013 Nucleocytoplasmic transport
11406653
03015 mRNA surveillance pathway
11406653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11406653
03041 Spliceosome [BR:
mtr03041
]
11406653
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
11406653
TREX complex
11406653
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
11406653
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
11406653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
11406653
NCBI-ProteinID:
XP_003600719
UniProt:
G7J9D5
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All DBs
Position
3:complement(33113300..33124375)
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AA seq
291 aa
AA seq
DB search
MASSLDISLDDRIKSRSNRGRGRGRGKALSGRGSGTLGGGRRTGAVNGRRTSNGGRTGAV
RRGPLNVNTRASSYAIAKSIRRPKTLAWQSDLFEDSLRAAGIQGVEADTKLYVSNLDRGV
TNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMK
IEIVGTNSALPVTARVNVSSMNVSAMNGQRKRTVVMTPRGGRGGGPAMLNRGAGWGRRGG
SRGGSGSMRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMQT
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttccttggatatttcccttgatgatagaattaagagcagaagtaacagaggc
aggggcagaggacgtggcaaagccctttctggccgtggaagtgggactctaggaggtgga
aggaggacaggtgctgttaatggtagaaggactagtaatggtggaagaactggtgctgtt
cgtagaggcccacttaatgtcaacactcgcgcgtcatcttatgctattgccaagtctatt
cgcagacccaagactcttgcatggcagagtgatttgtttgaggatagccttagagctgca
ggaattcaaggagtagaagctgacactaagttgtatgtttccaatttggatcgaggagtg
accaatgaagacataagggaacttttctctgagcttggggagttgaagcgctatgcggtt
cattatgacaaaaatggacacccaactggttcagctgaagttgtctacaatagaagaagt
gatgcatttgctgctctgaaacgatacaacaatgtgcttttggatggaaagcccatgaag
attgagattgttggaacaaattcagcattgcctgtgactgcacgggtgaatgtctcttca
atgaatgtctctgcaatgaatggacagaggaagaggactgttgtaatgacgcctagaggt
ggtcgaggtggaggtcctgccatgctgaatcgtggtgcaggttgggggcgtcgtggtggc
tcaaggggtgggagcgggagcatgcgtggacgtggtcgaggccgtcctggcaggggtgga
ggtcgaggtcgtggaagaaaggatggagttgagaagtcagctgagcagcttgacaaggaa
ctggagacctatcacgcagaggctatgcaaacatga
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