Medicago truncatula (barrel medic): 11407187
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Entry
11407187 CDS
T01716
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11407187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mtr03041
]
11407187
Spliceosome [BR:
mtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
11407187
Complex C
U4/U6.U5 tri-SnRNP related factors
11407187
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
11407187
NCBI-ProteinID:
XP_003591188
UniProt:
A2Q158
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All DBs
Position
1:41118997..41123078
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AA seq
385 aa
AA seq
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MANRTDPAAKSIRGTNPQNLVEKILRSKIYQHTYWKEQCFGLTAETLVDKAMELDHLGGT
YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKYVRILGAFYLRLTGSDTDVYHYL
EPLYNDYRKLRRKLPDGQFALTHVDEVIDELLTTDYSCDIAMPRIKKRWTLESLGALEPR
QSALEEDFEEEEENEDNEQPAEEPEKDYNRGRSPARERDRDRRRDSHRHRDRDYDREYDR
DYDRERGRGRDRDRDRDREKERDRDRERDRDRYRLREEKDYGREREGRERERRDRDRDRG
RRRSYSRSRSRSRDRKDHDGGDYRKRHARSSVSPRRDGAEDGEPKKKKEKKEKKEKKDDG
TDHPDPEIAEANRIRASLGLKPLKM
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcgcactgatccagcagcgaagagtattcgaggcacaaaccctcaaaacctt
gttgaaaaaattctccgctcaaagatctatcagcacacttattggaaagaacaatgcttc
ggcttaacagcagaaaccctagtcgacaaagccatggagctcgaccacctcggcggaact
tacggtggcaaccgcaaacccactcccttcatgtgcctcgtcatgaaaatgcttcagatt
caacccgagaaagaaatcgtcatcgaattcatcaaaaacgatgattacaagtatgtgagg
atactgggtgcattttatttgcgtcttactggatctgatacggatgtgtaccattatctg
gagccgttgtataatgattataggaaactgcggcggaaattaccggatggacagtttgct
ttgacacatgttgatgaggttattgatgaacttcttacaactgattattcctgtgatatt
gctatgccccgtattaagaaaaggtggactcttgaatctcttggtgccttagaacctaga
caaagtgcacttgaagaggattttgaggaggaagaggaaaatgaggataatgaacagcct
gctgaggagcctgagaaggattataatcgtgggcgaagccctgcaagggaaagagatagg
gatagaagacgtgatagtcatagacacagggatcgtgactatgacagagaatatgataga
gattatgacagagagcgaggacgtggccgagatagagatcgggacagagatagggaaaag
gaaagggacagagatagggagagggacagagaccgatatcgtctgagggaagaaaaggat
tatggtcgtgagagagaaggtagggagcgcgagaggagagacagagatcgtgaccgtggt
aggaggaggagctactcaaggagtcgaagtagaagcagggatcgcaaggatcatgatggt
ggggactacagaaagagacatgctcgaagtagcgtaagtccaagaagagatggagctgag
gatggtgagccaaagaagaagaaggaaaagaaagaaaagaaggaaaagaaggatgacggg
accgaccatccagatccagagattgcagaagcaaacaggatacgagcatcactgggtttg
aaaccacttaagatgtga
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