Medicago truncatula (barrel medic): 11407768
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Entry
11407768 CDS
T01716
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03082
ATP-dependent chromatin remodeling
mtr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
11407768
03083 Polycomb repressive complex
11407768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mtr03036
]
11407768
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
11407768
Histone modification proteins
HAT complexes
HATB complex
11407768
HDAC complexes
Sin3A-HDAC complex
11407768
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
11407768
PRC2.2
11407768
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
11407768
Heterochromatin formation proteins
Other heterochromatin formation proteins
11407768
Chromatin remodeling factors
NuRD complex
11407768
NuRF complex
11407768
NuRF complex (fruit fly)
11407768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_TEP1_C
eIF2A
Beta-prop_RIG_1st
Beta-prop_SPT8
NBCH_WD40
MIOS_WD40
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
11407768
NCBI-ProteinID:
XP_003608509
UniProt:
G7JE05
LinkDB
All DBs
Position
4:complement(46471391..46475574)
Genome browser
AA seq
423 aa
AA seq
DB search
MGKEDEEMRGEIEERIINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRTEPSGKD
YSVQKLILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRPEVGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNSFVIATKTVSAEVYVFDYSKHPSKPPIDGSCNPDLRLRGHNTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAHQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLVWDLRTPSVTKPVQSCIAHSSEVNCLAFNPFNEWIVATGSTDKTVKL
WDLRKIGNVLHTFDCHKEEVFQVGWNPKNETVLASCCLGRRLMVWDLSRIDEEQSPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDMPEQSA
QAP
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagaagacgaagaaatgagaggcgaaatagaagaacgaataatcaacgaagaa
tacaaaatctggaagaaaaacagtcccttcctctacgatctcgtcatcactcacgctctc
gaatggccatctctcaccgtcgaatggcttccagatcgcactgaaccctccggcaaagac
tactccgtccaaaaactcatcctcgggacccacacttccgaaaatgaacccaattatctc
atgctcgctcaagttcaactccctctcgacgactccgaaaacgacgcccgtcattacgat
gacgatcgtcctgaagttggagggtttggttgtgccaatgggaaggttcagataattcaa
cagattaatcatgatggtgaggttaatagagcgaggtatatgcctcagaatagttttgtg
attgctactaagacggttagtgctgaggtttatgtttttgattatagtaaacatccttct
aagcctccaattgatggaagttgtaaccctgatttgaggttaagaggtcataatactgaa
gggtatggtttgtcttggagtaagtttaaacaaggacatttgcttagtggttctgatgat
gctcagatttgtttgtgggatattaatggtactcctaagaataagtctcttgatgctcat
cagatttttaaggttcatgaaggtgttgtggaagacgtggcttggcatttgaggcatgag
tatttgtttggttctgttggggatgatcagtatttgcttgtatgggatctaaggacaccg
tctgttactaagcctgttcagtcttgcattgctcattctagcgaggttaactgcttggct
ttcaatcccttcaatgaatggatagttgctactggttctactgacaaaacagtgaaactg
tgggatctgcgcaagatcggcaatgttcttcacacctttgattgccataaggaggaggtt
ttccaggttggctggaatccaaagaatgagactgtcttggcttcttgttgtcttggtagg
agactgatggtgtgggatcttagcaggatcgatgaagagcagtcacccgaggatgctgaa
gatggtccaccagaactgctttttattcatggtggtcatacaagcaaaatatctgacttc
tcatggaacccatgtgaagattgggttgttgctagtgtggctgaagacaacatacttcaa
atatggcagatggcagagaacatttaccatgacgaagatgatatgccagaacagtcagca
caggccccttaa
DBGET
integrated database retrieval system
