Medicago truncatula (barrel medic): 11408570
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Entry
11408570 CDS
T01716
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
11408570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11408570
03041 Spliceosome [BR:
mtr03041
]
11408570
03009 Ribosome biogenesis [BR:
mtr03009
]
11408570
03016 Transfer RNA biogenesis [BR:
mtr03016
]
11408570
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
11408570
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
11408570
Spliceosome [BR:
mtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
11408570
Complex C
U4/U6.U5 tri-SnRNP related factors
11408570
Ribosome biogenesis [BR:
mtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
11408570
Transfer RNA biogenesis [BR:
mtr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
11408570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
MSS51_C
Motif
Other DBs
NCBI-GeneID:
11408570
NCBI-ProteinID:
XP_003615544
UniProt:
G7KE11
LinkDB
All DBs
Position
5:30719888..30728039
Genome browser
AA seq
967 aa
AA seq
DB search
MEQETAKNQKSRTVRKKSETNTDGGGNASALPKKRRSSERTCVHKVAVPIDYISTKDEAL
YGTLSSPLHNGTMAKTFPFTLDQFQQVSIACLERNESVLVSAHTSAGKTAIAEYAIAMSL
RDKRKVLYTSPLKSLNNQKYSELRQEFTDVGLITGDITIYPSEAKCLIMTTEILRGMLYR
GSEVLNEVDWVIFDEIHCMKDGERGVVWEESIILLPPTVKMVFLSATLSNALEFAEWIST
LRKQPCHVICTNFRPTPIQHYVFPIGGRRLYPIVDENEEFMGDNFVMAENTFLKQKLGEG
NKGDMFKIVKMIMEKKFQPIIVFSFSKKECEHNLKSISKLDFNTQEEKERVLDIFEMAVL
TLNEEDRSLCAIKEVLPHLQRGIGIHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL
NMPAKTVVFSSVKKWDGHEHRYIRSGEYIQMSGRAGRRGKDEHGICIIMIDEQMNKNNLE
DIVLGKPAPLVSTFRLRYHSILNLMSRADGQFSAEHLISNSFHQFQYEKTLPEMKKRVSM
LEQKLALLDAAEKAEVSEYHKLKLKLAELQRKMSKKIRPDNILPFLCPGRLIKVRERGTD
WGWGVVVDVVQEPVDDYIVDTLLHCSPGSNENSLQLKPCPPFPGEKGEMHVVPVQLTLIY
ALSQVKISLPHDIRPLKARQDILLGVQEICDRFPQGLPTINPAQDNVLKDSEIVELVKEM
ENLEKKLLDHPMHKIQDVEKNNITHFQRKADLNHEIQQLKEKMQYSQLQKFREELKNRSQ
VLKELGHIDADSVVQLKGKAACLIDMDDVLLVTELLFNGTFNHLDHHQVTALASCFMPID
KSSKKIQPTSLLERPLQQLQDSARRIAEIECKYRLRVNVNKYVKSTERPVIMDAIHSWSK
GSSFADVTQMTDIFEGSIITAARRLVGFLNQLRAGAEAVGENDLAKKFTAASESIRRGII
FTDSLYL
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagaaacagcgaagaaccagaaatcaagaacagttcggaaaaaatcggaaacc
aacacggacggcggcggcaacgcttctgcacttccaaagaaacggcggagttcagaacgc
acctgcgttcacaaagtagcagtaccaatcgattacatctcaacaaaagacgaagcactt
tacggaacactctccagtcctcttcacaacggtaccatggctaaaacatttccattcact
ctcgatcaatttcaacaagtatcgatcgcgtgtctcgaacgaaacgagtccgttctagtg
tctgctcacacatcagccggaaagactgctattgctgaatacgctatagcaatgtctttg
agagataaaagaaaggttctctacacttcacctctaaaatctttgaataatcagaaatac
agtgaattgagacaggaatttacagatgtagggttgataaccggtgatataacaatttat
ccttcggaggcgaaatgtttgattatgactacagaaattcttcggggaatgttgtatcgt
ggatctgaagttttgaatgaagttgactgggtaatttttgatgagatacattgcatgaaa
gatggtgaaagaggcgtggtttgggaagaaagcattatcctcttaccacctacagttaaa
atggtttttctttcggctactttgtcgaatgctctagagtttgcggagtggatttctact
ttacgtaaacaaccttgtcatgtgatatgcaccaattttcgcccgacgcctatacagcat
tatgtttttcctattggaggtaggagattgtacccgattgttgatgagaatgaggagttt
atgggtgataattttgtcatggccgaaaatacttttcttaagcagaaactcggtgaaggg
aataagggagacatgttcaaaattgttaagatgatcatggaaaagaaattccaacctatt
attgtctttagcttcagtaagaaagagtgcgagcacaatttaaaatctatatctaaactt
gacttcaatacccaagaggaaaaggaaagagtgctggatatttttgagatggcagtgctg
actctgaatgaagaagatcggagcttatgtgctataaaggaggtgttgccacatcttcag
cgaggaattggtatccatcattccggtcttcttcctgtcatcaaagaattggttgagctt
ctttttcaggaaggtctggtaaaggccctctttgctaccgagacatttgcaatgggttta
aatatgccggcaaagactgtcgtgttctcttctgttaagaagtgggatggacatgaacac
cgttatattagatctggtgaatatatacagatgagtggaagggcagggcgtcgtggcaaa
gatgagcatgggatttgtatcataatgattgatgagcagatgaacaagaataacctcgaa
gacatcgttctgggtaaacccgctcctttagttagtacattcaggcttcgctaccattcc
attttaaatttgatgagccgtgcagacggccagttcagtgccgaacaccttataagcaat
tcatttcatcaatttcaatatgaaaagaccttacctgagatgaaaaaaagggtgtctatg
ctggagcagaaattagccttgcttgatgctgcagagaaggctgaagtatcggaatatcat
aagctgaaattgaaattagctgagcttcagaggaaaatgtcaaaaaaaattagacctgat
aatattcttccctttctttgccctggtcgactgattaaagtaagagaacgtggaacagat
tggggctggggtgttgtagtcgatgttgttcaggaacctgttgatgattatatagtcgac
actttacttcattgttcacctggttcaaacgaaaacagtttacaactaaaaccatgtcca
cccttccctggagagaaaggtgaaatgcatgtggtccctgttcaattaacattaatctat
gcccttagtcaagtaaagatctctctacctcatgatatccggcccttgaaagctcggcaa
gatatactccttggtgttcaggagatatgtgatcgttttcctcaaggtcttccaacgatt
aaccctgcacaggacaatgttttaaaagattcagagatagttgaacttgtcaaagaaatg
gaaaatttagagaagaagttgttagatcatcctatgcataagattcaagatgtggaaaag
aataatattacgcactttcagaggaaagctgatctgaatcatgaaattcaacaactgaag
gaaaaaatgcagtactcccagctgcaaaaatttcgggaagaacttaaaaatcgctcgcag
gtcttaaaggagcttggtcatattgatgctgatagtgtagttcaattgaaaggaaaggca
gcttgcttgattgacatggacgatgtactccttgtcaccgaattattgtttaatggcact
tttaatcatcttgatcatcatcaagttactgcccttgcaagttgttttatgccaatagat
aaatcatctaagaagatacagccgacatcactgcttgagagacctctacaacagcttcaa
gacagtgcaagaaggatagcagagatagagtgcaaatacagattgcgggtaaatgtgaac
aagtatgtcaaatcaacagaaaggccagtcattatggatgcaatacactcttggtcaaag
ggatcaagttttgctgatgttactcaaatgactgacatctttgaggggagtatcattacg
gctgctagaaggcttgttgggtttttgaatcagttgcgtgctggtgccgaggcagttgga
gaaaatgacttggcgaagaaatttacagcagcgagtgaaagcattcgacggggtattatt
tttacagattctctgtatctgtga
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