Medicago truncatula (barrel medic): 11408942
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Entry
11408942 CDS
T01716
Name
(RefSeq) formin-like protein 5
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03013
Nucleocytoplasmic transport
mtr03015
mRNA surveillance pathway
mtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
11408942
09122 Translation
03013 Nucleocytoplasmic transport
11408942
03015 mRNA surveillance pathway
11408942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11408942
03041 Spliceosome [BR:
mtr03041
]
11408942
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
11408942
Spliceosome [BR:
mtr03041
]
Complex C
Other components
EJC/TREX
11408942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
LbH_EIF2B
Motif
Other DBs
NCBI-GeneID:
11408942
NCBI-ProteinID:
XP_003602011
UniProt:
G7J4D9
LinkDB
All DBs
Position
3:43250869..43254795
Genome browser
AA seq
720 aa
AA seq
DB search
MSSNSKYPILDDKPIDKWKVTELKEELKRRKLVTKGLKEDLINRLDEALREEREAAEAAR
KKEQEAAEASPEQEAAEGSKKDEANGLDTQVDELKDSKTINVDAEVFGTIQASEQGNSGV
VEPFETDNVAKVPEVLDNDGIKNVDEDGVTDPVDANNSVSAMDVEGEHVESANAGEEAVA
HPSNVETTVTITETVVTKTVSTEVVVDGQDSYSSEKNNEDSAIKLGNEESKVQLDSEDSK
PQLESDTKPPCDNLMPNSSAPENQVSEVNPSIIGTQVKSDSFSTDSVSINQKNELKDTII
ANNVKLEQDNVRQEMVEEPSSRNDVPVYDESHSVDVGGLHEKKSSVEANNNNVTSPELNK
TNSSDDVGYSEKLNLDRSSGDDSMEEDLPEIRQYDSKFNDELSDKVENNEVLKGKEQSKT
IVVGDGVSARNSDTHQDMNISTVSLTEKRKYPEQTLVGNNEPAKRQRRWNTEAVKGADLQ
STTPRSATTPKDGQITLKRNLSRSNSSATDDTPKERIVPPSRRAPTNSLRIDQFLRPFTL
KAVQELLGKTGSVSSFWMDQIKTHCYVTYSSTEEAIETRNAVYNLQWPTNGGRLLIAEFV
DPEEVKMKLEAPPTPTAAVNSAPIVPPAPPSSQPEPSPRQHREQHLPVTLPPPPPLVRPP
PVAREHLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSTRQ
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaactcaaaatacccgattctggacgataagcctattgataagtggaaggtt
acagagctgaaagaggaactgaaaagaaggaagttggttaccaaaggtttgaaggaagat
ttaattaatcgtttggacgaagcccttcgcgaggaaagggaggctgctgaggctgcccgc
aaaaaggaacaggaggctgccgaggcttcccccgaacaggaggcagccgagggttcgaag
aaggacgaggctaacggtttggacactcaagttgatgagttaaaagattccaagactatt
aatgtggacgctgaagtgtttggtacaattcaagcttctgaacaggggaatagtggtgta
gttgaaccatttgaaactgataatgtagcgaaggttccagaggttttggataatgacggt
attaagaatgttgacgaggatggtgtcactgacccagttgacgctaataatagtgtgtca
gcaatggatgtagaaggtgaacatgtggaatctgctaacgcgggagaggaggctgttgcc
catccttctaatgtggagaccactgttacgataactgagactgtcgtcaccaagactgta
tcaacagaagtagtagtcgatggtcaggattcttatagttctgagaagaataatgaggat
tcggcaatcaagctagggaatgaggaatcaaaggtgcagctggacagtgaggactcaaag
ccccaactggagtctgacacaaagcctccatgtgacaatctcatgcccaactcttccgct
ccagaaaaccaggtatctgaggtcaaccctagtataatagggactcaagtaaaatctgat
tctttttctactgattctgtgtcaattaatcaaaagaatgaactaaaggatactataatt
gctaataatgtcaaattagaacaagataatgttaggcaagagatggtggaagaaccatca
tccagaaatgatgtacctgtttatgatgaatcgcattcagtggatgttggagggctgcat
gaaaaaaagtcatctgttgaagcaaataacaacaatgttacgagtccagagttgaacaaa
accaatagtagtgatgatgtaggttattcagaaaagttgaacttggacagaagttctggt
gatgattctatggaagaggacttgcctgagattaggcaatatgattctaagtttaatgat
gaacttagtgacaaagttgagaataatgaagtccttaaggggaaggagcaaagcaaaaca
atagttgtgggtgatggcgtatccgcaagaaacagtgatacccaccaagatatgaacatt
agtactgtttccttgactgagaagcgaaaatatcctgaacaaacattagttgggaacaat
gagcctgcaaaaaggcaacgcagatggaacactgaggcagttaaaggagcagatctgcaa
agcactactcccagatctgctactacacccaaggacgggcaaattactctgaagcgcaac
ttatctaggtctaattcatctgcaactgatgatacacctaaagaacgcattgttccacca
tctcgaagagccccaacaaattccctcaggattgatcaattccttcgtccatttacccta
aaagcagtgcaagaacttcttgggaaaactgggagcgtcagcagtttctggatggaccaa
ataaagacccattgctatgttacttactcgtccactgaagaggccattgaaacacgaaat
gctgtgtataacttgcaatggcctacaaatggtgggcggctcttaattgccgagtttgtt
gatcctgaagaagtgaaaatgaagttagaagctcctcccactccaactgctgctgtcaac
agtgctccaatagttcctcccgcaccaccctcttcacagccggagccttcccctcgtcag
cacagggaacaacatcttccagttactctcccacctccaccaccattggtaaggccccca
ccagttgctagggaacaccttccatcgccaccgccccttcccgagaaagtggacccacct
attgtcactctagatgatctcttccgtaaaaccactgcaactcctcggatctattattta
cctttgtctgaagagcaagttgctgcaaaacttgcggcacagggtaagagtacaaggcag
tag
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