Medicago truncatula (barrel medic): 11409358
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Entry
11409358 CDS
T01716
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr00040
Pentose and glucuronate interconversions
mtr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
11409358
Enzymes [BR:
mtr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
11409358
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
11409358
NCBI-ProteinID:
XP_003622996
UniProt:
G7L2D3
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Position
7:27833856..27839720
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AA seq
444 aa
AA seq
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MELRFSSHFIFTILAITLLFAFTNAIDSNESRVVNGEEKLKMQSLNNSSMAESLSHDAIN
EHAVDNPEEIASMVDTTIRNHTERRSLSFFSCGTGNPMDDCWRCDKLWYRRRKRLADCAI
GFGRNAIGGRDGRYYVVNNPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELI
MNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTM
ADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDSY
VRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQGNR
YLAPQNPFAKEVTKRVDTGSGIWKGWNWRSEGDLLLNGAFFTPSGRGAAASYARASSLGA
KPSSLVGTLTAGAGVIKCRRGGMC
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggagttacggttttcatcacacttcattttcaccattctcgctatcacgcttcttttt
gctttcaccaatgctattgattctaatgaatcacgtgttgtgaatggagaagagaagttg
aagatgcagagcttgaataattcatcaatggcggaaagcttaagtcatgatgctatcaac
gagcatgcagttgataatccagaggagattgcttccatggttgatacgactatacgcaat
cacacggagagaaggagtctgagttttttctcatgtgggactggaaatccaatggatgac
tgctggcgctgtgacaagctttggtaccgccgccgaaagcggttggctgattgtgccatt
ggctttggtcgcaatgctattggtggccgcgacggaaggtactacgttgtgaataaccca
agagatgacgaccctgtgaacccaagacctggcactctccgtcacgccgtcattcaagat
aggccattgtggattgtgttcaagagagacatggtgatcaccctgaagcaagaattgatc
atgaacagttttaagaccatagatggtcgtggtgccaatgttcatattgcctttggagca
tgcattactattcaatttatcaccaatgtcatcatccatggtgtccatatccatgattgt
aagccgactggaaatgctatggttcgtagctccccttcccattttggatggaggacaatg
gctgatggtgatggcatttccatctttggttccagtcatatttggattgaccacaactct
ctgtctaattgcgctgatggtcttgttgatgctattatgggatccaccgccattaccgtt
tccaataactacttcacccaccacaatgaggttatgctattgggccacagtgactcatat
gttcgtgacaagcagatgcaagtaaccattgcatacaaccattttggggagggtcttatc
caaaggatgccaagatgcagacacgggtatttccacgtggtaaacaatgactatacacac
tgggtgatgtatgctattggaggcagtgctgaacccacaattaacagccaaggcaacaga
taccttgcccctcagaatccttttgccaaagaggtgacaaagagggtggatacagggtcc
ggaatatggaagggttggaattggaggtctgagggagaccttttgctaaatggagctttt
ttcactccatcaggaagaggagctgcagcaagctatgctagagcctcaagtttaggggcc
aaaccatcttctttagttggtactttaactgcaggtgctggtgttattaaatgtcgccgg
ggtggcatgtgttaa
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