Medicago truncatula (barrel medic): 11410109
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Entry
11410109 CDS
T01716
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
mtr
Medicago truncatula (barrel medic)
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mtr03016
]
11410109
Enzymes [BR:
mtr01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
11410109
Transfer RNA biogenesis [BR:
mtr03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
11410109
Prokaryotic type
11410109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
11410109
NCBI-ProteinID:
XP_003615971
UniProt:
G7KFJ8
LinkDB
All DBs
Position
5:complement(33015856..33019758)
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AA seq
501 aa
AA seq
DB search
MAAAASSLRLTLSPLLRKVPYTNSTPIIGNRRRWECFRYCSFSSTPQSYSWQPFRKKKVV
MRIAYTGTNYRGLQMQRDQNSLSTVEKELESAIFKAGGIRESNLGDLEKIGWARSSRTDK
GVHSLATMVAFKMEIPENSWNEDPFGFALANYVNSYLPCDIKVISILPAQRSFDPRKECV
LRKYSYLLPADIIGIQSHSSNDEIDYHMSEFNDILKEFEGGHPFHNYTSRSRYRRHIPRR
PSHSKCGEILSAYNSEQEDSDEEENFKVDEALTGNIECQNQKSSGTSDSCEPVIETGNKG
NLHDQSSSSVVRAKWLYEPDEADRLNASHFRRVFRCSSGKLEKSMGHSYIEIYIEGESFM
LHQIRKMVATAVAVKRKLLPRDIITLSLSKFSRIILPLAPSEVLLLRGNSFSMRTKPGNV
TRPEMQTIVESEEINKVVDDFYRSVMLPQVSKFLDPSRVPWVEWIEKFDAHTSIPNDQLD
EVRKARNLWKENFDSVMSAHL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgcagcttcatctctgcgactcacactgtctccattgctgagaaaagttcca
tacacaaatagtacacccattattgggaacagaagaagatgggaatgttttcgttactgc
tcattttcatctacgccacaatcatattcatggcaaccatttcgtaagaaaaaggttgtt
atgcgtattgcttacaccggcaccaattaccgaggtctccaaatgcaacgtgatcaaaat
tcactctccactgttgagaaagaactagaaagtgcgatattcaaagctggtggcatccgt
gagagtaatttaggggatctggagaaaattggatgggccagaagtagccgaaccgacaaa
ggagttcactctctcgcaacaatggtagcatttaaaatggaaatcccagaaaactcttgg
aatgaagacccttttggctttgcccttgcaaattatgttaattcttatcttccttgcgat
atcaaagtaataagcattttaccggcacaaagaagctttgatcctagaaaggaatgcgtt
ttgcggaaatattcctacctactccctgctgatattattggtattcaaagccactctagc
aatgatgaaattgattaccacatgtcggagttcaacgatattctcaaagaatttgagggg
ggacatcctttccataattatacatctaggtcgaggtacagaagacatattcctcgtcga
ccctcacattcaaagtgcggcgagattttatcagcttacaattcagaacaagaggatagt
gacgaggaagaaaattttaaagttgatgaagctcttacaggaaacatagaatgccaaaac
caaaagtcttcaggaacttctgattcttgcgaacctgttattgagaccggcaataaagga
aatttgcatgatcaaagttctagttcggttgttcgtgcaaaatggttatatgaacctgat
gaagcagacagattaaatgcttcccatttcagaagagtttttaggtgttcttctggaaag
cttgaaaaatcaatgggacatagttacatagagatctacattgagggagagtccttcatg
ttgcatcagataagaaaaatggttgcaacagccgtggcagtaaagcgcaaattacttcca
agagatattataacactctcattgtcaaagttctcgcgaatcattctacctcttgcacca
tcagaagttctattattaagaggaaacagcttctcaatgagaactaagccaggaaatgta
acaagacccgaaatgcagacaatagttgaatcagaagaaattaataaggttgttgatgat
ttttacagatcagttatgttacctcaagtttcaaagtttttggatccatcaagagttcct
tgggtggaatggattgagaaatttgatgctcatacaagcataccaaatgatcagttggac
gaggtcaggaaggctaggaacttgtggaaagaaaattttgatagtgtaatgagtgcgcat
ctttga
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